Variant report

Variant	rs3798936
Chromosome Location	chr6:161646714-161646715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:161644500..161646792-chr6:161664234..161665888,2	K562	blood:
2	chr6:161627192..161630553-chr6:161645842..161649703,4	K562	blood:
3	chr6:161646694..161648332-chr6:161648631..161651457,2	MCF-7	breast:
4	chr6:161640886..161642499-chr6:161645265..161647234,2	K562	blood:
5	chr6:161640999..161643689-chr6:161644349..161647234,3	K562	blood:
6	chr6:161644845..161647790-chr6:161673839..161676108,3	K562	blood:
7	chr6:161633927..161636817-chr6:161646220..161647804,3	K562	blood:
8	chr6:161643850..161652009-chr6:161690298..161699013,9	K562	blood:
9	chr6:161496125..161498637-chr6:161646119..161648729,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000026652	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6906489	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs9295142	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv949397	chr6:161592100-161812932	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2752091	chr6:161592100-161855785	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1029727	chr6:161607680-161814295	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1030623	chr6:161611170-161796985	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv538494	chr6:161611170-161796985	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv886818	chr6:161629323-161723705	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161599800-161647600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr6:161634200-161649800	Weak transcription	Pancreas	Pancrea
3	chr6:161636000-161646800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:161636200-161647800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:161636400-161648200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:161636400-161649200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:161636600-161647200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:161636600-161648800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:161636600-161655000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:161636600-161656000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:161636800-161647200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:161637000-161647000	Weak transcription	Colon Smooth Muscle	Colon
13	chr6:161637000-161649000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:161637000-161650000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr6:161637400-161649200	Weak transcription	Osteobl	bone
16	chr6:161637600-161648600	Weak transcription	NH-A	brain
17	chr6:161637600-161649800	Weak transcription	NHLF	lung
18	chr6:161638200-161693800	Weak transcription	Fetal Intestine Small	intestine
19	chr6:161638400-161650600	Weak transcription	Esophagus	oesophagus
20	chr6:161638600-161647200	Weak transcription	Fetal Lung	lung
21	chr6:161638600-161649400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:161638600-161668000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:161639000-161647000	Weak transcription	Right Atrium	heart
24	chr6:161639000-161647600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr6:161639000-161647800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:161639000-161650000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:161639000-161666200	Weak transcription	Aorta	Aorta
28	chr6:161639200-161646800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr6:161639200-161646800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr6:161639200-161647000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:161639200-161647800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:161639200-161648400	Weak transcription	Primary B cells from cord blood	blood
33	chr6:161639200-161648400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr6:161639200-161664400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr6:161639400-161647000	Weak transcription	Brain Anterior Caudate	brain
36	chr6:161639400-161650000	Weak transcription	Brain Germinal Matrix	brain
37	chr6:161639600-161647200	Weak transcription	Fetal Muscle Leg	muscle
38	chr6:161639800-161650200	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr6:161641200-161646800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr6:161641200-161647600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr6:161641800-161649400	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr6:161643000-161649800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr6:161643200-161649800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:161643800-161648800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:161643800-161650400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr6:161644000-161650000	Enhancers	Primary T cells fromperipheralblood	blood
47	chr6:161644200-161647000	Weak transcription	Brain Hippocampus Middle	brain
48	chr6:161644200-161647400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr6:161644200-161647400	Strong transcription	Fetal Muscle Trunk	muscle
50	chr6:161644200-161647800	Weak transcription	Lung	lung

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