Variant report

Variant	rs3798937
Chromosome Location	chr6:161647962-161647963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:161618563..161621478-chr6:161647109..161649124,2	K562	blood:
2	chr6:161626465..161628692-chr6:161647387..161649703,2	K562	blood:
3	chr6:161646998..161649019-chr6:161649045..161652363,4	K562	blood:
4	chr6:161627192..161630553-chr6:161645842..161649703,4	K562	blood:
5	chr6:161646694..161648332-chr6:161648631..161651457,2	MCF-7	breast:
6	chr6:161641039..161643585-chr6:161647425..161650031,3	K562	blood:
7	chr6:161411442..161414851-chr6:161647170..161650760,5	K562	blood:
8	chr6:161638711..161640555-chr6:161647734..161649604,2	K562	blood:
9	chr6:161643850..161652009-chr6:161690298..161699013,9	K562	blood:
10	chr6:161496125..161498637-chr6:161646119..161648729,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000026652	Chromatin interaction
ENSG00000272841	Chromatin interaction
ENSG00000085511	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs3778229	0.82[JPT][hapmap]
rs6455713	0.81[MEX][hapmap];0.82[TSI][hapmap]
rs7763278	0.82[JPT][hapmap]
rs9295142	0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv949397	chr6:161592100-161812932	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2752091	chr6:161592100-161855785	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1029727	chr6:161607680-161814295	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1030623	chr6:161611170-161796985	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv538494	chr6:161611170-161796985	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv886818	chr6:161629323-161723705	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv481931	chr6:161647026-161961906	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161634200-161649800	Weak transcription	Pancreas	Pancrea
2	chr6:161636400-161648200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:161636400-161649200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:161636600-161648800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:161636600-161655000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:161636600-161656000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:161637000-161649000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:161637000-161650000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:161637400-161649200	Weak transcription	Osteobl	bone
10	chr6:161637600-161648600	Weak transcription	NH-A	brain
11	chr6:161637600-161649800	Weak transcription	NHLF	lung
12	chr6:161638200-161693800	Weak transcription	Fetal Intestine Small	intestine
13	chr6:161638400-161650600	Weak transcription	Esophagus	oesophagus
14	chr6:161638600-161649400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:161638600-161668000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:161639000-161650000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:161639000-161666200	Weak transcription	Aorta	Aorta
18	chr6:161639200-161648400	Weak transcription	Primary B cells from cord blood	blood
19	chr6:161639200-161648400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr6:161639200-161664400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:161639400-161650000	Weak transcription	Brain Germinal Matrix	brain
22	chr6:161639800-161650200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr6:161641800-161649400	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr6:161643000-161649800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr6:161643200-161649800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:161643800-161648800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:161643800-161650400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:161644000-161650000	Enhancers	Primary T cells fromperipheralblood	blood
29	chr6:161644200-161648400	Weak transcription	Gastric	stomach
30	chr6:161644200-161649200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:161644400-161648200	Weak transcription	HUVEC	blood vessel
32	chr6:161644400-161655000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr6:161644600-161651800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr6:161645200-161649400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr6:161646000-161648600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:161646000-161649000	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr6:161646000-161653200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr6:161646200-161648200	Strong transcription	Fetal Brain Female	brain
39	chr6:161646200-161649200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:161646200-161649600	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr6:161646600-161648000	Enhancers	Primary T cells from cord blood	blood
42	chr6:161646600-161648000	Enhancers	HSMMtube	muscle
43	chr6:161646600-161648200	Flanking Active TSS	K562	blood
44	chr6:161646600-161648600	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr6:161646600-161648800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr6:161646600-161648800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr6:161646600-161649200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:161646600-161649600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr6:161646600-161649600	Enhancers	Spleen	Spleen
50	chr6:161646600-161649800	Enhancers	Brain Cingulate Gyrus	brain

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