Variant report

Variant	rs3798960
Chromosome Location	chr6:161692923-161692924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161636650..161638663-chr6:161691150..161693376,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1321851	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6926382	0.87[CHB][hapmap]
rs747866	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv949397	chr6:161592100-161812932	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2752091	chr6:161592100-161855785	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1029727	chr6:161607680-161814295	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1030623	chr6:161611170-161796985	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv538494	chr6:161611170-161796985	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv886818	chr6:161629323-161723705	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv481931	chr6:161647026-161961906	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv533149	chr6:161653240-161769727	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv1031234	chr6:161676768-162250726	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv869611	chr6:161690974-161817564	Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161638200-161693800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:161649600-161693800	Weak transcription	Right Atrium	heart
3	chr6:161653800-161693800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:161657600-161693600	Weak transcription	Left Ventricle	heart
5	chr6:161664800-161693800	Weak transcription	HSMM	muscle
6	chr6:161665000-161693600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:161666800-161694200	Weak transcription	Aorta	Aorta
8	chr6:161672800-161694200	Weak transcription	Lung	lung
9	chr6:161672800-161694200	Weak transcription	Right Ventricle	heart
10	chr6:161676000-161693800	Weak transcription	Adipose Nuclei	Adipose
11	chr6:161676200-161694000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:161678200-161693600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr6:161678600-161694200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:161678800-161693600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr6:161678800-161694000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:161679800-161693600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:161680200-161693800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr6:161680200-161693800	Weak transcription	Small Intestine	intestine
19	chr6:161681000-161693800	Weak transcription	HMEC	breast
20	chr6:161681000-161694200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:161681200-161693200	Weak transcription	HUVEC	blood vessel
22	chr6:161681200-161693600	Weak transcription	NHLF	lung
23	chr6:161683000-161693200	Weak transcription	NHEK	skin
24	chr6:161685800-161693000	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr6:161686200-161693800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr6:161687600-161693200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:161687800-161693200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr6:161687800-161693600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:161687800-161693600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:161687800-161693600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:161687800-161694000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:161688000-161693600	Weak transcription	Fetal Stomach	stomach
33	chr6:161688200-161694200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:161689400-161693200	Weak transcription	Primary T cells from cord blood	blood
35	chr6:161689600-161693200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:161689800-161693600	Weak transcription	Primary hematopoietic stem cells	blood
37	chr6:161690000-161693800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr6:161690600-161693000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:161690800-161693800	Weak transcription	Ovary	ovary
40	chr6:161691000-161693600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr6:161691800-161693000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
42	chr6:161691800-161693200	Flanking Active TSS	Brain Hippocampus Middle	brain
43	chr6:161691800-161693800	Active TSS	Brain Substantia Nigra	brain
44	chr6:161692000-161693200	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr6:161692000-161693200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:161692000-161693600	Flanking Active TSS	Fetal Brain Female	brain
47	chr6:161692000-161693800	Enhancers	Colon Smooth Muscle	Colon
48	chr6:161692000-161695600	Active TSS	Brain Cingulate Gyrus	brain
49	chr6:161692200-161693000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr6:161692200-161693000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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