Variant report

Variant	rs3799108
Chromosome Location	chr6:70407758-70407759
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16867995	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16868038	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16868102	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16868111	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2502546	0.88[ASN][1000 genomes]
rs2502547	0.91[ASN][1000 genomes]
rs2502548	0.91[ASN][1000 genomes]
rs3752788	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60397804	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70378800-70409600	Weak transcription	Brain Substantia Nigra	brain
2	chr6:70378800-70416800	Weak transcription	Fetal Kidney	kidney
3	chr6:70378800-70430800	Weak transcription	Fetal Stomach	stomach
4	chr6:70378800-70430800	Weak transcription	Spleen	Spleen
5	chr6:70378800-70435200	Weak transcription	Psoas Muscle	Psoas
6	chr6:70379000-70428400	Weak transcription	Ovary	ovary
7	chr6:70379000-70435400	Weak transcription	Fetal Brain Male	brain
8	chr6:70379600-70431000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:70380400-70430600	Weak transcription	Fetal Intestine Small	intestine
10	chr6:70380600-70455600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr6:70380800-70467800	Weak transcription	K562	blood
12	chr6:70382200-70435400	Weak transcription	Brain Angular Gyrus	brain
13	chr6:70382400-70430200	Weak transcription	Small Intestine	intestine
14	chr6:70383800-70407800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr6:70383800-70431000	Weak transcription	Lung	lung
16	chr6:70384000-70415800	Weak transcription	Fetal Lung	lung
17	chr6:70384200-70428400	Weak transcription	Aorta	Aorta
18	chr6:70384200-70431000	Weak transcription	Fetal Muscle Leg	muscle
19	chr6:70384600-70407800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr6:70384600-70407800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr6:70384600-70409800	Weak transcription	Brain Hippocampus Middle	brain
22	chr6:70384600-70417400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:70385000-70421600	Weak transcription	Fetal Intestine Large	intestine
24	chr6:70386400-70408000	Weak transcription	Placenta	Placenta
25	chr6:70387000-70407800	Weak transcription	Dnd41	blood
26	chr6:70387200-70407800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:70387600-70407800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr6:70387600-70415600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr6:70388000-70423400	Weak transcription	Left Ventricle	heart
30	chr6:70396200-70412200	Strong transcription	Primary B cells from peripheral blood	blood
31	chr6:70397200-70410200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:70397200-70415600	Weak transcription	Primary T cells from cord blood	blood
33	chr6:70397800-70439000	Weak transcription	Fetal Heart	heart
34	chr6:70398000-70423000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr6:70400800-70430800	Weak transcription	Pancreas	Pancrea
36	chr6:70402000-70412000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:70402000-70430800	Weak transcription	Esophagus	oesophagus
38	chr6:70402200-70435200	Weak transcription	Brain Anterior Caudate	brain
39	chr6:70402800-70430800	Weak transcription	Fetal Muscle Trunk	muscle
40	chr6:70403000-70429800	Weak transcription	NHDF-Ad	bronchial
41	chr6:70403200-70415400	Weak transcription	HSMM	muscle
42	chr6:70403400-70432200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:70403800-70412600	Weak transcription	HSMMtube	muscle
44	chr6:70403800-70422800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr6:70404200-70447400	Weak transcription	Hela-S3	cervix
46	chr6:70404400-70408600	Strong transcription	Primary B cells from cord blood	blood
47	chr6:70404400-70409000	Weak transcription	Osteobl	bone
48	chr6:70404400-70410800	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr6:70404400-70420000	Weak transcription	NHLF	lung
50	chr6:70404600-70408600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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