Variant report
| Variant | rs3799684 |
|---|---|
| Chromosome Location | chr6:49674612-49674613 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:49672074..49677551-chr6:49678532..49683707,8 | K562 | blood: | |
| 2 | chr6:49653286..49655370-chr6:49672668..49674772,2 | K562 | blood: | |
| 3 | chr6:49602506..49604622-chr6:49673985..49676942,2 | K562 | blood: | |
| 4 | chr6:49652949..49655370-chr6:49673063..49674772,2 | K562 | blood: | |
| 5 | chr6:49671946..49673936-chr6:49674455..49676625,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000112077 | Chromatin interaction |
| ENSG00000124490 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs1019824 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs11752847 | 0.82[ASN][1000 genomes] |
| rs1429599 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs16879746 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs1820880 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1820881 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs1884954 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs28372929 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs28372930 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2894763 | 0.86[ASN][1000 genomes] |
| rs4715144 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs57224238 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6900082 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6902472 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7450124 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7769994 | 0.85[ASN][1000 genomes] |
| rs962952 | 0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933942 | chr6:49480550-50004231 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv933833 | chr6:49515134-49961765 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:49672600-49681800 | Strong transcription | Primary neutrophils fromperipheralblood | blood |
