Variant report

Variant	rs3800186
Chromosome Location	chr6:2222157-2222158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12529910	0.82[CHB][hapmap];0.85[JPT][hapmap];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs234920	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530548	chr6:1441421-2351608	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv931941	chr6:1768439-2246781	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv531295	chr6:1773436-2724986	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
4	nsv1025814	chr6:2064629-2308518	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
5	nsv538098	chr6:2064629-2308518	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
6	nsv1030181	chr6:2071210-2308657	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
7	nsv538099	chr6:2071210-2308657	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
8	nsv883388	chr6:2093432-2514911	Strong transcription Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
9	nsv883389	chr6:2093432-2776303	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
10	nsv830573	chr6:2120985-2263646	Bivalent Enhancer Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
11	nsv1022623	chr6:2199666-2267750	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
12	nsv538100	chr6:2199666-2267750	ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
13	nsv1022166	chr6:2199666-2320800	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
14	nsv1017174	chr6:2213893-2340529	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
15	nsv1033201	chr6:2218647-2308518	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
16	nsv538101	chr6:2218647-2308518	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:2212600-2222200	Weak transcription	Aorta	Aorta
2	chr6:2214000-2222200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:2214000-2222400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:2214400-2222200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:2217400-2222200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:2217400-2222400	Weak transcription	Lung	lung
7	chr6:2217400-2231400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:2217400-2231400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:2217600-2222400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:2218200-2222200	Weak transcription	Stomach Mucosa	stomach
11	chr6:2218400-2222200	Weak transcription	Pancreas	Pancrea
12	chr6:2219400-2224600	Genic enhancers	HepG2	liver
13	chr6:2221400-2222800	Weak transcription	Gastric	stomach
14	chr6:2221800-2222200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr6:2221800-2222400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:2221800-2222600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:2221800-2222600	Active TSS	Monocytes-CD14+_RO01746	blood
18	chr6:2221800-2223000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
19	chr6:2221800-2223000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:2221800-2223200	Flanking Active TSS	Hela-S3	cervix
21	chr6:2222000-2222200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:2222000-2222200	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr6:2222000-2222200	Flanking Active TSS	Primary T cells from cord blood	blood
24	chr6:2222000-2222200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
25	chr6:2222000-2222200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
26	chr6:2222000-2222200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr6:2222000-2222200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
28	chr6:2222000-2222200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
29	chr6:2222000-2222200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
30	chr6:2222000-2222200	Active TSS	Cortex derived primary cultured neurospheres	brain
31	chr6:2222000-2222200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:2222000-2222200	Flanking Active TSS	Adipose Nuclei	Adipose
33	chr6:2222000-2222200	Enhancers	Brain Germinal Matrix	brain
34	chr6:2222000-2222200	Active TSS	Fetal Thymus	thymus
35	chr6:2222000-2222200	Flanking Active TSS	Dnd41	blood
36	chr6:2222000-2222200	Flanking Active TSS	HUVEC	blood vessel
37	chr6:2222000-2222400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:2222000-2222400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:2222000-2222400	Active TSS	Primary monocytes fromperipheralblood	blood
40	chr6:2222000-2222400	Active TSS	Primary B cells from peripheral blood	blood
41	chr6:2222000-2222400	Active TSS	Primary T helper cells PMA-I stimulated	--
42	chr6:2222000-2222400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
43	chr6:2222000-2222400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:2222000-2222400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:2222000-2222400	Active TSS	Colonic Mucosa	Colon
46	chr6:2222000-2222400	Active TSS	Duodenum Mucosa	Duodenum
47	chr6:2222000-2222400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
48	chr6:2222000-2222400	Active TSS	Fetal Intestine Small	intestine
49	chr6:2222000-2222400	Active TSS	Rectal Mucosa Donor 31	rectum
50	chr6:2222000-2222400	Active TSS	Skeletal Muscle Female	skeletal muscle

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