Variant report

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:27210460-27210610	BE2_C	brain:	n/a	n/a
2	TCF7L2	chr6:27210454-27212017	HEK293	kidney:	n/a	n/a
3	POLR2A	chr6:27208304-27211412	K562	blood:	n/a	n/a
4	CTCF	chr6:27210540-27210690	HFF-Myc	foreskin:	n/a	n/a
5	TEAD4	chr6:27210320-27210734	K562	blood:	n/a	n/a
6	CTCF	chr6:27210540-27210690	A549	lung:	n/a	n/a
7	TEAD4	chr6:27210330-27210997	K562	blood:	n/a	n/a
8	CTCF	chr6:27210540-27210690	HCT-116	colon:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27208172..27214279-chr6:27217175..27221037,5	MCF-7	breast:
2	chr6:27208791..27211821-chr6:27212133..27214069,3	K562	blood:
3	chr6:27112441..27115377-chr6:27208801..27210793,2	K562	blood:
4	chr6:27203954..27208601-chr6:27209090..27212437,6	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11964003	0.92[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs11964043	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13437191	1.00[JPT][hapmap]
rs13437532	0.87[JPT][hapmap]
rs17739298	0.92[CEU][hapmap]
rs3800308	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3800312	0.93[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3800313	0.93[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4145206	0.92[CEU][hapmap]
rs4711143	0.87[JPT][hapmap]
rs4711144	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4713075	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4713077	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs5030957	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs5030960	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs58336089	0.89[EUR][1000 genomes]
rs6902483	0.82[EUR][1000 genomes]
rs6906761	0.93[JPT][hapmap]
rs6912503	0.93[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6918423	0.89[EUR][1000 genomes]
rs6932243	0.94[JPT][hapmap]
rs7755577	0.93[JPT][hapmap]
rs9393794	0.89[EUR][1000 genomes]
rs9461340	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs9468006	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs9468011	0.86[EUR][1000 genomes]
rs9468014	0.92[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9468016	0.93[CEU][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	nsv1017328	chr6:27177147-27369588	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27207000-27212200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:27210400-27211000	Enhancers	K562	blood

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