Variant report

Variant	rs3801154
Chromosome Location	chr7:139571151-139571152
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:139569773..139572484-chr7:139574430..139577098,5	K562	blood:
2	chr7:139570493..139572036-chr7:139580707..139582614,2	K562	blood:
3	chr7:139569956..139571774-chr7:139572106..139574390,3	K562	blood:
4	chr7:139570208..139572010-chr7:139574757..139577098,3	K562	blood:
5	chr7:139569956..139571774-chr7:139571776..139574105,3	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1015572	0.85[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2267697	0.85[CEU][hapmap]
rs2267698	0.85[CEU][hapmap]
rs6464450	0.85[CEU][hapmap]
rs6464451	0.85[CEU][hapmap]
rs6952982	0.85[CEU][hapmap]
rs6965165	0.85[CEU][hapmap]
rs7805971	0.85[CEU][hapmap]
rs8192813	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020234	chr7:139377822-139661964	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032711	chr7:139411404-139684043	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv464732	chr7:139424022-139654256	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv608472	chr7:139424022-139654256	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1018712	chr7:139429703-139658014	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv831156	chr7:139532318-139694326	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1019001	chr7:139558216-139841268	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv1029099	chr7:139558216-139869148	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139531400-139572600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:139555600-139571800	Weak transcription	Thymus	Thymus
3	chr7:139560600-139572000	Weak transcription	Fetal Thymus	thymus
4	chr7:139565200-139571400	Weak transcription	Aorta	Aorta
5	chr7:139566200-139571400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:139567400-139598400	Weak transcription	Primary T cells from cord blood	blood
7	chr7:139568000-139571800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:139568800-139574600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr7:139569600-139574600	Strong transcription	Primary hematopoietic stem cells	blood
10	chr7:139569800-139572600	Weak transcription	Spleen	Spleen
11	chr7:139569800-139575600	Weak transcription	Small Intestine	intestine
12	chr7:139570000-139572800	Weak transcription	Lung	lung
13	chr7:139570000-139587800	Weak transcription	Primary B cells from cord blood	blood
14	chr7:139570200-139575200	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr7:139570400-139571600	Enhancers	Right Atrium	heart
16	chr7:139570400-139572000	Enhancers	Fetal Lung	lung
17	chr7:139570400-139572200	Enhancers	Stomach Mucosa	stomach
18	chr7:139570400-139572400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:139570400-139574800	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr7:139570600-139571200	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr7:139570600-139571400	Enhancers	Duodenum Mucosa	Duodenum
22	chr7:139570600-139571600	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr7:139570600-139572000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr7:139570600-139572000	Enhancers	Placenta	Placenta
25	chr7:139570600-139572200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr7:139570600-139572200	Enhancers	Adipose Nuclei	Adipose
27	chr7:139570600-139572200	Enhancers	NHLF	lung
28	chr7:139570600-139575600	Weak transcription	Gastric	stomach
29	chr7:139570800-139571600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr7:139570800-139571800	Enhancers	Fetal Kidney	kidney
31	chr7:139570800-139572000	Enhancers	Osteobl	bone
32	chr7:139570800-139575600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr7:139571000-139571200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr7:139571000-139571200	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr7:139571000-139571600	Enhancers	HUVEC	blood vessel
36	chr7:139571000-139572000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr7:139571000-139572000	Enhancers	Muscle Satellite Cultured Cells	--
38	chr7:139571000-139572200	Enhancers	Fetal Brain Male	brain

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