Variant report

Variant	rs3801619
Chromosome Location	chr7:83722488-83722489
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs11971623	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11972281	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11974629	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11976014	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11976072	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11976558	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11977682	0.85[EUR][1000 genomes]
rs12707611	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13228082	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13233499	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13241906	0.82[EUR][1000 genomes]
rs1524880	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1524881	0.84[ASN][1000 genomes]
rs17232537	0.82[EUR][1000 genomes]
rs17232705	0.85[EUR][1000 genomes]
rs17298417	0.86[EUR][1000 genomes]
rs2040876	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2040877	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2057844	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2057845	0.89[EUR][1000 genomes]
rs2057846	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34132658	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34197283	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34197825	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34614886	0.84[ASN][1000 genomes]
rs34665905	0.80[EUR][1000 genomes]
rs34934460	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35211989	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35573285	0.82[EUR][1000 genomes]
rs35638242	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35824530	0.81[EUR][1000 genomes]
rs36064207	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3801611	0.84[ASN][1000 genomes]
rs3801612	0.84[ASN][1000 genomes]
rs3801615	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3801616	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3801617	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41441447	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4732537	0.84[ASN][1000 genomes]
rs4732538	0.84[ASN][1000 genomes]
rs4732539	0.83[ASN][1000 genomes]
rs55740798	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62477282	0.85[ASN][1000 genomes]
rs62477283	0.85[ASN][1000 genomes]
rs62477284	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62477285	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs62477289	0.81[EUR][1000 genomes]
rs62477290	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62477294	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62477297	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62477298	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62477300	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6467981	0.82[EUR][1000 genomes]
rs6467982	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6467983	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6467984	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6467985	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67782928	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6960973	0.84[ASN][1000 genomes]
rs6965990	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6974271	0.84[ASN][1000 genomes]
rs7780843	0.82[EUR][1000 genomes]
rs7784963	0.86[EUR][1000 genomes]
rs7787984	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7801091	0.82[ASN][1000 genomes]
rs7801235	0.84[ASN][1000 genomes]
rs7804363	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7806871	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs917089	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888628	chr7:83659577-83722691	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83715600-83730200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:83715600-83731400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:83718400-83722800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr7:83718400-83735000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:83720400-83722800	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr7:83720800-83722800	Enhancers	Fetal Heart	heart
7	chr7:83720800-83723400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:83721600-83735200	Weak transcription	Colon Smooth Muscle	Colon
9	chr7:83721800-83722600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr7:83721800-83722800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr7:83721800-83723000	Weak transcription	HepG2	liver
12	chr7:83721800-83723200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:83721800-83723800	Weak transcription	Fetal Brain Male	brain
14	chr7:83721800-83726800	Enhancers	Primary T cells from cord blood	blood
15	chr7:83721800-83728600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:83722000-83722600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr7:83722000-83723000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:83722000-83724600	Weak transcription	Pancreas	Pancrea
19	chr7:83722000-83726400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:83722200-83722800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr7:83722200-83723400	Enhancers	Dnd41	blood
22	chr7:83722200-83724800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr7:83722200-83724800	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr7:83722200-83724800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr7:83722200-83734000	Weak transcription	Fetal Lung	lung
26	chr7:83722200-83734200	Weak transcription	NHDF-Ad	bronchial
27	chr7:83722200-83735800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr7:83722200-83737600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr7:83722200-83738400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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