Variant report

Variant	rs3801776
Chromosome Location	chr7:27205282-27205283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr7:27205069-27205367	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr7:27205053-27205384	MCF10A-Er-Src	breast:	n/a	n/a
3	USF1	chr7:27204970-27205392	H1-hESC	embryonic stem cell:	n/a	chr7:27205221-27205230 chr7:27205220-27205229 chr7:27205220-27205229 chr7:27205218-27205231 chr7:27205219-27205228 chr7:27205214-27205235 chr7:27205086-27205102
4	USF1	chr7:27204989-27205489	H1-hESC	embryonic stem cell:	n/a	chr7:27205221-27205230 chr7:27205220-27205229 chr7:27205220-27205229 chr7:27205218-27205231 chr7:27205219-27205228 chr7:27205214-27205235 chr7:27205086-27205102
5	USF1	chr7:27204998-27205456	SK-N-SH	brain:	n/a	chr7:27205221-27205230 chr7:27205220-27205229 chr7:27205220-27205229 chr7:27205218-27205231 chr7:27205219-27205228 chr7:27205214-27205235 chr7:27205086-27205102
6	SUZ12	chr7:27203193-27205459	H1-hESC	embryonic stem cell:	n/a	n/a
7	CTBP2	chr7:27203932-27205359	H1-hESC	embryonic stem cell:	n/a	n/a
8	FOS	chr7:27205043-27205358	MCF10A-Er-Src	breast:	n/a	n/a
9	MYC	chr7:27205050-27205462	MCF10A-Er-Src	breast:	n/a	chr7:27205220-27205229
10	USF1	chr7:27204720-27205887	HCT-116	colon:	n/a	chr7:27205221-27205230 chr7:27205220-27205229 chr7:27205220-27205229 chr7:27205218-27205231 chr7:27205219-27205228 chr7:27205214-27205235 chr7:27205086-27205102
11	POLR2A	chr7:27204638-27205292	ProgFib	skin:	n/a	n/a
12	FOS	chr7:27205069-27205384	MCF10A-Er-Src	breast:	n/a	n/a
13	USF2	chr7:27205055-27205408	H1-hESC	embryonic stem cell:	n/a	chr7:27205221-27205230 chr7:27205220-27205229 chr7:27205220-27205229 chr7:27205218-27205231 chr7:27205219-27205228 chr7:27205214-27205235 chr7:27205086-27205102
14	POLR2A	chr7:27204714-27206270	HCT-116	colon:	n/a	n/a
15	FOS	chr7:27204970-27205353	HUVEC	blood vessel:	n/a	n/a
16	ATF3	chr7:27205041-27205395	H1-hESC	embryonic stem cell:	n/a	chr7:27205195-27205204
17	MAX	chr7:27204826-27205660	HUVEC	blood vessel:	n/a	chr7:27205220-27205229
18	TCF7L2	chr7:27204915-27205817	HEK293	kidney:	n/a	n/a
19	E2F4	chr7:27205069-27205348	MCF10A-Er-Src	breast:	n/a	chr7:27205197-27205206
20	POLR2A	chr7:27204751-27205375	GM12892	blood:	n/a	n/a
21	POLR2A	chr7:27203931-27205308	HUVEC	blood vessel:	n/a	n/a
22	MYC	chr7:27204985-27205337	HUVEC	blood vessel:	n/a	chr7:27205220-27205229
23	SUZ12	chr7:27203385-27210188	NT2-D1	testis:	n/a	n/a
24	POLR2A	chr7:27204898-27205335	MCF10A-Er-Src	breast:	n/a	n/a
25	POLR2A	chr7:27203115-27206230	HUVEC	blood vessel:	n/a	n/a
26	CHD2	chr7:27205063-27205286	H1-hESC	embryonic stem cell:	n/a	n/a
27	POLR2A	chr7:27204120-27205678	HCT-116	colon:	n/a	n/a
28	POLR2A	chr7:27204607-27205312	MCF10A-Er-Src	breast:	n/a	n/a
29	CTCF	chr7:27205178-27205290	Kidney_OC	kidney:	n/a	n/a
30	POLR2A	chr7:27203923-27207102	GM12892	blood:	n/a	n/a
31	POLR2A	chr7:27204295-27206014	HCT-116	colon:	n/a	n/a
32	POLR2A	chr7:27204675-27205564	HUVEC	blood vessel:	n/a	n/a
33	TCF7L2	chr7:27204788-27207012	HCT-116	colon:	n/a	n/a
34	POLR2A	chr7:27204909-27205293	GM12892	blood:	n/a	n/a
35	MYC	chr7:27204575-27205340	MCF10A-Er-Src	breast:	n/a	chr7:27205220-27205229
36	ATF3	chr7:27205081-27205347	H1-hESC	embryonic stem cell:	n/a	chr7:27205195-27205204
37	POLR2A	chr7:27203725-27205875	HUVEC	blood vessel:	n/a	n/a
38	USF1	chr7:27204737-27205754	HCT-116	colon:	n/a	chr7:27205221-27205230 chr7:27205220-27205229 chr7:27205220-27205229 chr7:27205218-27205231 chr7:27205219-27205228 chr7:27205214-27205235 chr7:27205086-27205102
39	POLR2A	chr7:27204335-27206388	HEK293	kidney:	n/a	n/a
40	ZNF263	chr7:27203441-27206899	HEK293-T-REx	kidney:	n/a	chr7:27203686-27203707 chr7:27206396-27206405
41	POLR2A	chr7:27204881-27205456	HUVEC	blood vessel:	n/a	n/a
42	YY1	chr7:27204906-27205453	HCT-116	colon:	n/a	chr7:27205189-27205203
43	USF1	chr7:27205044-27205373	SK-N-SH_RA	brain:	n/a	chr7:27205221-27205230 chr7:27205220-27205229 chr7:27205220-27205229 chr7:27205218-27205231 chr7:27205219-27205228 chr7:27205214-27205235 chr7:27205086-27205102
44	POLR2A	chr7:27204657-27206280	HUVEC	blood vessel:	n/a	n/a
45	USF1	chr7:27205049-27205329	SK-N-SH_RA	brain:	n/a	chr7:27205221-27205230 chr7:27205220-27205229 chr7:27205220-27205229 chr7:27205218-27205231 chr7:27205219-27205228 chr7:27205214-27205235 chr7:27205086-27205102

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:27205262-27205312	HCM	heart:	n/a
2	chr7:27205262-27205312	GM12892	blood:	n/a
3	chr7:27205262-27205312	HUVEC	blood vessel:	n/a
4	chr7:27205262-27205312	HRE	kidney:	n/a
5	chr7:27205262-27205312	AG04449	skin:	fetal
6	chr7:27205262-27205312	HL-60	blood:	n/a
7	chr7:27205262-27205312	HEK293	kidney:	embryo
8	chr7:27205262-27205312	AoSMC	blood vessel:	n/a
9	chr7:27205262-27205312	AG09309	skin:	n/a
10	chr7:27205262-27205312	SK-N-SH	brain:	n/a
11	chr7:27205262-27205312	IMR90	lung:	fetal
12	chr7:27205262-27205312	T-47D	breast:	n/a
13	chr7:27205262-27205312	NH-A	brain:	n/a
14	chr7:27205262-27205312	GM19239	blood:	n/a
15	chr7:27205262-27205312	Caco-2	colon:	n/a
16	chr7:27205262-27205312	SKMC	muscle:	n/a
17	chr7:27205262-27205312	Jurkat	blood:	n/a
18	chr7:27205262-27205312	BJ	skin:	n/a
19	chr7:27205262-27205312	HPAEpiC	pulmonary alveolar:	n/a
20	chr7:27205262-27205312	SK-N-SH_RA	brain:	n/a
21	chr7:27205262-27205312	GM06990	blood:	n/a
22	chr7:27205262-27205312	HEEpiC	esophagus:	n/a
23	chr7:27205262-27205312	U87	brain:	n/a
24	chr7:27205262-27205312	NHBE	bronchial:	n/a
25	chr7:27205262-27205312	HepG2	liver:	n/a
26	chr7:27205262-27205312	RPTEC	kidney:	n/a
27	chr7:27205262-27205312	HCF	heart:	n/a
28	chr7:27205262-27205312	CMK	blood:	n/a
29	chr7:27205262-27205312	HAEpiC	amniotic membrane:	n/a
30	chr7:27205262-27205312	AG09319	gingival:	n/a
31	chr7:27205262-27205312	Hepatocyte	liver:	n/a
32	chr7:27205262-27205312	Hela-S3	cervix:	n/a
33	chr7:27205262-27205312	AG10803	skin:	n/a
34	chr7:27205262-27205312	GM12891	blood:	n/a
35	chr7:27205262-27205312	K562	blood:	n/a
36	chr7:27205262-27205312	LNCaP	prostate:	n/a
37	chr7:27205262-27205312	MCF-7	breast:	n/a
38	chr7:27205262-27205312	HRCEpiC	kidney:	n/a
39	chr7:27205262-27205312	MCF10A-Er-Src	breast:	n/a
40	chr7:27205262-27205312	GM12878	blood:	n/a
41	chr7:27205262-27205312	A549	lung:	n/a
42	chr7:27205262-27205312	NB4	blood:	n/a
43	chr7:27205262-27205312	AG04450	lung:	fetal
44	chr7:27205262-27205312	PANC-1	pancreas:	n/a
45	chr7:27205262-27205312	NHDF-neo	bronchial:	n/a
46	chr7:27205262-27205312	NT2-D1	testis:	n/a
47	chr7:27205262-27205312	HCT-116	colon:	n/a
48	chr7:27205262-27205312	BE2_C	brain:	n/a
49	chr7:27205262-27205312	ECC-1	luminal epithelium:	n/a
50	chr7:27205262-27205312	HIPEpiC	eye:	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27202891..27205946-chr7:27211956..27215443,3	MCF-7	breast:
2	7:27162022-27164727..7:27203007-27207968	H1-hESC	embryonic stem cell:	embryo
3	chr7:27204665..27205348-chr8:29208036..29208824,2	HCT-116	colon:
4	chr7:27204957..27205843-chrX:153990762..153991399,2	HCT-116	colon:
5	7:27061277-27071265..7:27203007-27207968	H1-hESC	embryonic stem cell:	embryo
6	chr7:27203892..27207242-chr7:27209723..27213341,3	MCF-7	breast:
7	7:27203007-27207968..7:27230275-27238414	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
HOXA10-AS	TF binding region
HOXA9	TF binding region
HOXA10-AS	CpG island
HOXA9	CpG island
ENSG00000266055	Chromatin interaction
ENSG00000243766	Chromatin interaction
ENSG00000253508	Chromatin interaction
ENSG00000257184	Chromatin interaction
ENSG00000130826	Chromatin interaction
ENSG00000078399	Chromatin interaction
ENSG00000120875	Chromatin interaction
ENSG00000253552	Chromatin interaction
ENSG00000214869	Chromatin interaction
ENSG00000253293	Chromatin interaction
ENSG00000106031	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10259620	0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs3757640	0.90[CHD][hapmap]
rs7810502	0.95[CHB][hapmap];0.92[CHD][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs875896	0.94[CHB][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs983186	0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv1018709	chr7:26990384-27216552	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
4	nsv538806	chr7:26990384-27216552	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
5	nsv887856	chr7:27073731-27297791	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	183 gene(s)	inside rSNPs	diseases
6	nsv824038	chr7:27119294-27284522	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	183 gene(s)	inside rSNPs	diseases
7	nsv887857	chr7:27120689-27229549	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
8	nsv824039	chr7:27121825-27294951	Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	183 gene(s)	inside rSNPs	diseases
9	nsv824040	chr7:27121870-27295010	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	183 gene(s)	inside rSNPs	diseases
10	nsv887861	chr7:27127231-27206688	Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
11	nsv887862	chr7:27127231-27217359	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
12	nsv887863	chr7:27127231-27243106	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
13	nsv887864	chr7:27127231-27243962	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
14	nsv887865	chr7:27127231-27247279	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
15	nsv887866	chr7:27127231-27248373	Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
16	nsv887867	chr7:27127231-27252246	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
17	nsv824041	chr7:27128039-27294951	Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	183 gene(s)	inside rSNPs	diseases
18	nsv887869	chr7:27135314-27297791	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
19	nsv1020608	chr7:27139892-27324004	Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
20	nsv538807	chr7:27139892-27324004	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
21	nsv1033316	chr7:27140645-27237951	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
22	nsv606465	chr7:27143757-27229549	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	174 gene(s)	inside rSNPs	diseases
23	nsv887875	chr7:27145100-27243962	Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
24	nsv532118	chr7:27146920-27354205	Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
25	nsv824042	chr7:27169231-27247232	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
26	nsv887877	chr7:27169388-27217359	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	115 gene(s)	inside rSNPs	diseases
27	nsv887878	chr7:27175295-27214557	Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
28	nsv887879	chr7:27175295-27297791	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
29	esv1798853	chr7:27181568-27309266	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	150 gene(s)	inside rSNPs	diseases
30	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
31	esv1825750	chr7:27200918-27227027	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
32	nsv606468	chr7:27202289-27281304	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	135 gene(s)	inside rSNPs	diseases
33	nsv887880	chr7:27205282-27294701	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
34	nsv887881	chr7:27205282-27297791	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27199600-27206400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:27200000-27206000	Active TSS	NHDF-Ad	bronchial
3	chr7:27201200-27207400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:27202800-27209600	Flanking Active TSS	Adipose Nuclei	Adipose
5	chr7:27202800-27214400	Active TSS	Psoas Muscle	Psoas
6	chr7:27203000-27207000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
7	chr7:27203000-27208800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr7:27203000-27209200	Flanking Active TSS	Primary hematopoietic stem cells	blood
9	chr7:27203400-27205400	Active TSS	HUVEC	blood vessel
10	chr7:27203600-27205800	Active TSS	Muscle Satellite Cultured Cells	--
11	chr7:27203600-27205800	Active TSS	Sigmoid Colon	Sigmoid Colon
12	chr7:27203600-27207000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
13	chr7:27203600-27211000	Active TSS	HSMM	muscle
14	chr7:27203800-27205600	Bivalent Enhancer	Brain Germinal Matrix	brain
15	chr7:27203800-27205800	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
16	chr7:27203800-27206000	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
17	chr7:27203800-27206000	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
18	chr7:27203800-27206600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
19	chr7:27203800-27206600	Active TSS	HSMMtube	muscle
20	chr7:27203800-27206800	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
21	chr7:27203800-27207000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr7:27203800-27207000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
23	chr7:27203800-27207200	Bivalent/Poised TSS	Small Intestine	intestine
24	chr7:27203800-27211200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr7:27204000-27205400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:27204000-27205800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
27	chr7:27204000-27206000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr7:27204000-27206400	Active TSS	Osteobl	bone
29	chr7:27204000-27206600	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
30	chr7:27204000-27206600	Active TSS	NHEK	skin
31	chr7:27204000-27207000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
32	chr7:27204000-27207000	Active TSS	Rectal Mucosa Donor 31	rectum
33	chr7:27204000-27207200	Active TSS	Fetal Kidney	kidney
34	chr7:27204000-27210000	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
35	chr7:27204200-27206000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
36	chr7:27204200-27206400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
37	chr7:27204200-27208800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
38	chr7:27204400-27206600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
39	chr7:27204400-27207000	Bivalent Enhancer	Spleen	Spleen
40	chr7:27204400-27213000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
41	chr7:27204600-27205400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr7:27204600-27205400	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
43	chr7:27204600-27207200	Flanking Bivalent TSS/Enh	Thymus	Thymus
44	chr7:27204800-27205400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr7:27204800-27205400	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
46	chr7:27204800-27205400	Active TSS	Skeletal Muscle Male	skeletal muscle
47	chr7:27204800-27205600	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
48	chr7:27204800-27205600	Bivalent Enhancer	Fetal Brain Male	brain
49	chr7:27204800-27205600	Active TSS	Skeletal Muscle Female	skeletal muscle
50	chr7:27204800-27205800	Active TSS	Colon Smooth Muscle	Colon

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