Variant report

Variant	rs3802008
Chromosome Location	chr7:128141382-128141383
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:128139891..128142505-chr7:128169322..128171236,2	MCF-7	breast:
2	chr7:128140732..128143190-chr7:128377049..128379381,2	K562	blood:
3	chr7:128139215..128142117-chr7:128174144..128176717,2	K562	blood:

Variant related genes	Relation type
ENSG00000128595	Chromatin interaction
ENSG00000273270	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10230632	0.89[EUR][1000 genomes]
rs10245559	0.89[EUR][1000 genomes]
rs10271878	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2732432	0.87[EUR][1000 genomes]
rs35586323	0.86[EUR][1000 genomes]
rs3802007	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3958071	0.83[EUR][1000 genomes]
rs4391366	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7792770	0.82[ASN][1000 genomes]
rs7806863	0.82[ASN][1000 genomes]
rs7807302	0.82[ASN][1000 genomes]
rs9986842	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831124	chr7:127970345-128147910	Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv966883	chr7:128107081-128142581	Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128117800-128142800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:128117800-128162800	Weak transcription	Pancreas	Pancrea
3	chr7:128117800-128163400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:128118000-128141800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr7:128118000-128146400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr7:128118000-128146400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr7:128118200-128146400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr7:128118400-128147000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr7:128119200-128141400	Weak transcription	HUVEC	blood vessel
10	chr7:128119600-128142000	Weak transcription	Fetal Brain Male	brain
11	chr7:128121400-128147000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:128121800-128143800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr7:128122000-128155400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:128122400-128156800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:128125400-128141600	Weak transcription	Hela-S3	cervix
16	chr7:128128800-128142800	Strong transcription	Fetal Intestine Small	intestine
17	chr7:128128800-128143400	Weak transcription	HepG2	liver
18	chr7:128132000-128142200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:128132000-128145000	Strong transcription	Fetal Stomach	stomach
20	chr7:128132800-128143000	Strong transcription	Placenta	Placenta
21	chr7:128132800-128143800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr7:128133000-128143600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:128133400-128141600	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr7:128133400-128142200	Strong transcription	Lung	lung
25	chr7:128133400-128142400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:128133400-128142600	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr7:128133400-128142600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr7:128133400-128142600	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr7:128133400-128142800	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr7:128133400-128142800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr7:128133400-128144000	Strong transcription	Adipose Nuclei	Adipose
32	chr7:128133600-128142200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr7:128133600-128142200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr7:128133600-128142200	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chr7:128133600-128142600	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr7:128133600-128142600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr7:128133600-128142800	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr7:128133600-128143000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr7:128133600-128143800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr7:128133600-128144600	Strong transcription	Fetal Thymus	thymus
41	chr7:128133800-128141600	Strong transcription	Fetal Brain Female	brain
42	chr7:128133800-128142000	Strong transcription	Brain Anterior Caudate	brain
43	chr7:128133800-128142600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
44	chr7:128133800-128142600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr7:128133800-128142800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr7:128133800-128143200	Strong transcription	Fetal Muscle Trunk	muscle
47	chr7:128134000-128142200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr7:128134000-128142200	Strong transcription	Fetal Muscle Leg	muscle
49	chr7:128134200-128142000	Strong transcription	Stomach Smooth Muscle	stomach
50	chr7:128135600-128142000	Strong transcription	Primary T cells from cord blood	blood

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