Variant report

Variant	rs3802380
Chromosome Location	chr9:94566892-94566893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94560147..94563596-chr9:94565851..94569196,3	MCF-7	breast:
2	chr9:94559930..94562957-chr9:94564256..94567376,4	K562	blood:
3	chr9:94566439..94568761-chr9:94577681..94581250,3	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10761131	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10992118	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12336034	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12683746	0.90[AMR][1000 genomes]
rs16907798	0.90[AMR][1000 genomes]
rs2103301	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28580750	0.91[EUR][1000 genomes]
rs35357880	0.90[AMR][1000 genomes]
rs4743852	0.85[AMR][1000 genomes]
rs4743854	0.90[AMR][1000 genomes]
rs4744101	0.85[AMR][1000 genomes]
rs4744102	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744103	0.90[AMR][1000 genomes]
rs59394284	0.87[AMR][1000 genomes]
rs73513266	0.90[AMR][1000 genomes]
rs7849482	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7855006	0.85[AMR][1000 genomes]
rs7855609	0.85[AMR][1000 genomes]
rs7872107	0.87[AMR][1000 genomes]
rs7872492	0.90[AMR][1000 genomes]
rs9299398	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1036176	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540171	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
7	nsv523940	chr9:94546564-94573753	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv518372	chr9:94558126-94605908	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94560800-94568000	Enhancers	Rectal Smooth Muscle	rectum
2	chr9:94561000-94567600	Enhancers	Ovary	ovary
3	chr9:94561000-94567800	Enhancers	Duodenum Smooth Muscle	Duodenum
4	chr9:94561400-94567400	Enhancers	Fetal Lung	lung
5	chr9:94562000-94567400	Weak transcription	Esophagus	oesophagus
6	chr9:94562000-94575400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr9:94562000-94579400	Weak transcription	Gastric	stomach
8	chr9:94562200-94567400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:94564600-94567000	Enhancers	NHDF-Ad	bronchial
10	chr9:94564600-94567600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:94564600-94567800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr9:94564600-94568000	Enhancers	Fetal Stomach	stomach
13	chr9:94564800-94567200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:94565000-94567000	Enhancers	Adipose Nuclei	Adipose
15	chr9:94565000-94568600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:94565200-94568000	Enhancers	Fetal Muscle Leg	muscle
17	chr9:94565200-94568600	Enhancers	Fetal Heart	heart
18	chr9:94565200-94571800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:94565200-94573000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr9:94565400-94567000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:94565400-94567400	Weak transcription	Fetal Intestine Large	intestine
22	chr9:94565400-94568800	Enhancers	Colon Smooth Muscle	Colon
23	chr9:94565400-94575200	Enhancers	Stomach Smooth Muscle	stomach
24	chr9:94565800-94567800	Enhancers	Fetal Muscle Trunk	muscle
25	chr9:94566000-94567000	Enhancers	Colonic Mucosa	Colon
26	chr9:94566000-94567800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr9:94566200-94567000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:94566200-94567800	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr9:94566400-94567000	Enhancers	Placenta	Placenta
30	chr9:94566400-94568000	Enhancers	Right Atrium	heart
31	chr9:94566600-94567200	Enhancers	Spleen	Spleen
32	chr9:94566600-94567200	Enhancers	NHEK	skin
33	chr9:94566600-94567800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr9:94566600-94568200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:94566600-94568400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr9:94566600-94569800	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr9:94566600-94571600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr9:94566600-94571800	Weak transcription	Fetal Intestine Small	intestine
39	chr9:94566800-94569800	Weak transcription	K562	blood
40	chr9:94566800-94571600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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