Variant report

Variant	rs3802385
Chromosome Location	chr9:95878853-95878854
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95856945..95860499-chr9:95877670..95883441,5	MCF-7	breast:
2	chr9:95874739..95878921-chr9:95879079..95884047,10	K562	blood:
3	chr16:73090190..73092632-chr9:95878509..95880181,2	MCF-7	breast:
4	chr9:95869181..95871699-chr9:95878711..95880292,2	MCF-7	breast:
5	chr9:95874371..95880149-chr9:95880216..95885255,14	K562	blood:
6	chr9:95869643..95873929-chr9:95874567..95878954,6	MCF-7	breast:
7	chr9:95875459..95880390-chr9:95892230..95899028,13	K562	blood:

Variant related genes	Relation type
ENSG00000131669	Chromatin interaction
ENSG00000223446	Chromatin interaction
ENSG00000165233	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7046328	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	esv1824329	chr9:95811604-95921347	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv893578	chr9:95818641-95887320	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv893579	chr9:95855100-95923091	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	nsv893581	chr9:95872216-95930334	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	esv3405127	chr9:95876656-95879704	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	esv3438266	chr9:95876931-95879404	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	esv3321903	chr9:95877381-95878979	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95859600-95889400	Weak transcription	Fetal Kidney	kidney
2	chr9:95861800-95882000	Weak transcription	HSMMtube	muscle
3	chr9:95862000-95881800	Weak transcription	HUVEC	blood vessel
4	chr9:95870000-95895400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:95871000-95894200	Weak transcription	Dnd41	blood
6	chr9:95871600-95882000	Weak transcription	GM12878-XiMat	blood
7	chr9:95872200-95881600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr9:95872200-95882000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr9:95873400-95888800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr9:95873600-95881800	Weak transcription	NHEK	skin
11	chr9:95873600-95886000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:95874200-95881800	Weak transcription	NH-A	brain
13	chr9:95874800-95883600	Weak transcription	Primary T cells from cord blood	blood
14	chr9:95876000-95879200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:95876000-95879200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr9:95876000-95881600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr9:95876000-95881600	Weak transcription	Brain Angular Gyrus	brain
18	chr9:95876000-95882200	Weak transcription	Brain Substantia Nigra	brain
19	chr9:95876200-95881600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr9:95876400-95881600	Weak transcription	Primary B cells from peripheral blood	blood
21	chr9:95876400-95881800	Weak transcription	Right Ventricle	heart
22	chr9:95876600-95881600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr9:95876600-95881800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr9:95876600-95886000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:95876800-95881600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr9:95877000-95881600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr9:95877000-95882000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr9:95877000-95882200	Weak transcription	Thymus	Thymus
29	chr9:95877000-95889200	Weak transcription	Fetal Brain Female	brain
30	chr9:95877200-95881600	Weak transcription	HMEC	breast
31	chr9:95877200-95888800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr9:95877400-95879200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr9:95877400-95881600	Weak transcription	Fetal Stomach	stomach
34	chr9:95877400-95882000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr9:95877400-95882000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr9:95877400-95882200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr9:95877400-95883800	Weak transcription	Aorta	Aorta
38	chr9:95877400-95886000	Weak transcription	Brain Germinal Matrix	brain
39	chr9:95877600-95879000	Weak transcription	Brain Hippocampus Middle	brain
40	chr9:95877600-95881200	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr9:95877600-95881200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr9:95877600-95881400	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr9:95877600-95881600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr9:95877600-95881600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr9:95877600-95881600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr9:95877600-95881800	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr9:95877600-95882000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr9:95877800-95881800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr9:95878000-95881600	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr9:95878200-95879000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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