Variant report

Variant	rs3803019
Chromosome Location	chr12:39233426-39233427
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55845087	1.00[AMR][1000 genomes]
rs73262407	1.00[AMR][1000 genomes]
rs73269146	1.00[AMR][1000 genomes]
rs73269173	1.00[AMR][1000 genomes]
rs73271127	1.00[AMR][1000 genomes]
rs73273181	1.00[AMR][1000 genomes]
rs73274726	1.00[AMR][1000 genomes]
rs73274734	1.00[AMR][1000 genomes]
rs73274737	1.00[AMR][1000 genomes]
rs73274747	1.00[AMR][1000 genomes]
rs73274764	1.00[AMR][1000 genomes]
rs73274767	1.00[AMR][1000 genomes]
rs74087366	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047623	chr12:39187817-39539939	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv3389115	chr12:39221256-39448458	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39203200-39276000	Weak transcription	Aorta	Aorta
2	chr12:39204000-39284800	Weak transcription	Lung	lung
3	chr12:39206600-39243800	Weak transcription	Left Ventricle	heart
4	chr12:39206600-39249200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr12:39206800-39241400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr12:39206800-39241400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr12:39216000-39237400	Weak transcription	Hela-S3	cervix
8	chr12:39219200-39242600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr12:39221800-39251800	Weak transcription	Liver	Liver
10	chr12:39223600-39238400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr12:39224000-39241800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr12:39227800-39237200	Weak transcription	GM12878-XiMat	blood
13	chr12:39229400-39252200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr12:39232200-39239200	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr12:39232400-39247600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr12:39233200-39234400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr12:39233200-39241800	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr12:39233200-39244000	Weak transcription	Right Atrium	heart
19	chr12:39233200-39245800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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