Variant report

Variant	rs3803202
Chromosome Location	chr13:52470473-52470474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52470098..52471024-chr13:52701539..52702082,2	K562	blood:
2	chr13:52469831..52471115-chr13:52701846..52702769,5	MCF-7	breast:
3	chr13:52470005..52471061-chr13:52701639..52703231,8	MCF-7	breast:
4	chr13:52470122..52471057-chr13:52497836..52498780,6	K562	blood:

Variant related genes	Relation type
ENSG00000197168	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10507570	0.96[ASN][1000 genomes]
rs1054515	0.81[JPT][hapmap]
rs1985415	0.93[ASN][1000 genomes]
rs34944966	0.94[ASN][1000 genomes]
rs3803203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs489975	0.88[ASN][1000 genomes]
rs4941714	0.91[ASN][1000 genomes]
rs4943034	0.88[ASN][1000 genomes]
rs4943036	0.88[ASN][1000 genomes]
rs6561654	0.96[CHB][hapmap]
rs7324123	0.92[ASN][1000 genomes]
rs7336768	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999573	0.85[ASN][1000 genomes]
rs932913	0.87[JPT][hapmap]
rs9563077	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568671	0.86[ASN][1000 genomes]
rs9596606	0.88[ASN][1000 genomes]
rs9596607	0.88[ASN][1000 genomes]
rs9634847	0.88[ASN][1000 genomes]
rs9989110	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530718	chr13:52291802-52832752	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv933424	chr13:52293482-52507732	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1044310	chr13:52321564-52643924	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1050117	chr13:52325116-52643924	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52433800-52479400	Weak transcription	HepG2	liver
2	chr13:52457400-52480200	Weak transcription	Liver	Liver
3	chr13:52463800-52477000	Weak transcription	Fetal Intestine Small	intestine
4	chr13:52464600-52494400	Weak transcription	Aorta	Aorta
5	chr13:52467600-52480400	Weak transcription	Fetal Lung	lung
6	chr13:52469200-52470800	Enhancers	Fetal Thymus	thymus
7	chr13:52469600-52471400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr13:52469600-52471400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr13:52469600-52471400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr13:52469800-52470600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:52469800-52470600	Enhancers	Fetal Muscle Leg	muscle
12	chr13:52470000-52470800	Enhancers	Brain Cingulate Gyrus	brain
13	chr13:52470000-52471000	Enhancers	Brain Germinal Matrix	brain
14	chr13:52470000-52471200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr13:52470200-52470600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr13:52470200-52470600	Active TSS	Hela-S3	cervix
17	chr13:52470200-52470800	Enhancers	Brain Hippocampus Middle	brain
18	chr13:52470200-52471000	Enhancers	Primary hematopoietic stem cells	blood
19	chr13:52470400-52470800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr13:52470400-52470800	Enhancers	Brain Anterior Caudate	brain
21	chr13:52470400-52470800	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr13:52470400-52474400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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