Variant report

Variant	rs3803295
Chromosome Location	chr14:105395204-105395205
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:3)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:105395197-105395247	Jurkat	blood:	n/a
2	chr14:105395197-105395247	RPTEC	kidney:	n/a
3	chr14:105395197-105395247	NH-A	brain:	n/a
4	chr14:105395197-105395247	PANC-1	pancreas:	n/a
5	chr14:105395197-105395247	HEK293	kidney:	embryo
6	chr14:105395197-105395247	HepG2	liver:	n/a
7	chr14:105395197-105395247	AG10803	skin:	n/a
8	chr14:105395197-105395247	AG09319	gingival:	n/a
9	chr14:105395197-105395247	H1-hESC	embryonic stem cell:	embryo
10	chr14:105395197-105395247	HUVEC	blood vessel:	n/a
11	chr14:105395197-105395247	T-47D	breast:	n/a
12	chr14:105395197-105395247	HRCEpiC	kidney:	n/a
13	chr14:105395197-105395247	HNPCEpiC	eye:	n/a
14	chr14:105395197-105395247	IMR90	lung:	fetal
15	chr14:105395197-105395247	GM19239	blood:	n/a
16	chr14:105395197-105395247	AG04449	skin:	fetal
17	chr14:105395197-105395247	HMEC	breast:	n/a
18	chr14:105395197-105395247	GM12892	blood:	n/a
19	chr14:105395197-105395247	NHBE	bronchial:	n/a
20	chr14:105395197-105395247	AoSMC	blood vessel:	n/a
21	chr14:105395197-105395247	A549	lung:	n/a
22	chr14:105395197-105395247	PrEC	prostate:	n/a
23	chr14:105395197-105395247	MCF-7	breast:	n/a
24	chr14:105395197-105395247	HCPEpiC	choroid plexus:	n/a
25	chr14:105395197-105395247	ECC-1	luminal epithelium:	n/a
26	chr14:105395197-105395247	ProgFib	skin:	n/a
27	chr14:105395197-105395247	PFSK-1	brain:	n/a
28	chr14:105395197-105395247	BE2_C	brain:	n/a
29	chr14:105395197-105395247	HCF	heart:	n/a
30	chr14:105395197-105395247	SKMC	muscle:	n/a
31	chr14:105395197-105395247	SK-N-SH	brain:	n/a
32	chr14:105395197-105395247	K562	blood:	n/a
33	chr14:105395197-105395247	GM12878	blood:	n/a
34	chr14:105395197-105395247	NB4	blood:	n/a
35	chr14:105395197-105395247	SK-N-MC	brain:	n/a
36	chr14:105395197-105395247	NHDF-neo	bronchial:	n/a
37	chr14:105395197-105395247	Hepatocyte	liver:	n/a
38	chr14:105395197-105395247	HCM	heart:	n/a
39	chr14:105395197-105395247	GM06990	blood:	n/a
40	chr14:105395197-105395247	HAEpiC	amniotic membrane:	n/a
41	chr14:105395197-105395247	GM12891	blood:	n/a
42	chr14:105395197-105395247	AG04450	lung:	fetal
43	chr14:105395197-105395247	NT2-D1	testis:	n/a
44	chr14:105395197-105395247	AG09309	skin:	n/a
45	chr14:105395197-105395247	U87	brain:	n/a
46	chr14:105395197-105395247	HIPEpiC	eye:	n/a
47	chr14:105395197-105395247	BJ	skin:	n/a
48	chr14:105395197-105395247	HPAEpiC	pulmonary alveolar:	n/a
49	chr14:105395197-105395247	HRE	kidney:	n/a
50	chr14:105395197-105395247	SAEC	small airway:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:105387983..105391489-chr14:105392006..105395629,4	MCF-7	breast:
2	chr14:105393329..105396153-chr14:105398779..105401055,3	MCF-7	breast:
3	chr14:105393820..105396334-chr14:105396612..105399697,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KIAA0284-4	chr14:105395086-105395381	NONHSAT040306

No data

Variant related genes	Relation type
PLD4	CpG island
ENSG00000166428	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10134401	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053591	chr14:105024558-105475931	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	nsv542224	chr14:105024558-105475931	Bivalent Enhancer Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
3	esv1828345	chr14:105100787-105803170	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
4	nsv542225	chr14:105133688-105803170	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
5	nsv542227	chr14:105157572-105803170	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
6	nsv456456	chr14:105285159-105412541	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv566099	chr14:105285159-105412541	Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
8	nsv917106	chr14:105339195-105803170	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
9	nsv566139	chr14:105347296-105417147	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv902419	chr14:105381763-105494262	Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
11	nsv1049253	chr14:105384959-105471855	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
12	nsv542228	chr14:105390569-105459912	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105391000-105395400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:105391600-105398600	Weak transcription	Gastric	stomach
3	chr14:105392200-105395800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:105393600-105396000	Bivalent Enhancer	Placenta	Placenta
5	chr14:105393800-105395600	Genic enhancers	Primary B cells from peripheral blood	blood
6	chr14:105394200-105398200	Weak transcription	Spleen	Spleen
7	chr14:105394200-105398800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr14:105394200-105399000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr14:105394200-105399200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr14:105394400-105398200	Weak transcription	Pancreas	Pancrea
11	chr14:105394400-105398600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr14:105394400-105399000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr14:105394400-105399000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr14:105394400-105399000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr14:105394800-105395800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr14:105395000-105395400	Weak transcription	Primary B cells from cord blood	blood
17	chr14:105395000-105395600	Weak transcription	Esophagus	oesophagus
18	chr14:105395000-105397600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr14:105395000-105398800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr14:105395200-105395600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr14:105395200-105396400	Enhancers	Fetal Muscle Leg	muscle

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