Variant report

Variant	rs3803313
Chromosome Location	chr14:105070791-105070792
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C14orf180-2	chr14:105070351-105071697	ucscGeneNc_uc001yrr_2

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10129754	0.99[ASN][1000 genomes]
rs10135130	0.99[ASN][1000 genomes]
rs10136937	0.99[ASN][1000 genomes]
rs10137691	0.99[ASN][1000 genomes]
rs10138987	0.87[ASN][1000 genomes]
rs10144804	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10145420	0.88[ASN][1000 genomes]
rs10151692	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10151872	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10873548	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11160812	0.95[ASN][1000 genomes]
rs11625738	0.96[ASN][1000 genomes]
rs11625777	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11628111	0.99[ASN][1000 genomes]
rs11628289	0.87[ASN][1000 genomes]
rs11629201	0.95[ASN][1000 genomes]
rs12101271	0.82[ASN][1000 genomes]
rs12101275	0.82[ASN][1000 genomes]
rs12101279	0.82[ASN][1000 genomes]
rs12879330	0.82[ASN][1000 genomes]
rs12880146	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12880486	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12880651	0.91[ASN][1000 genomes]
rs12892016	0.99[ASN][1000 genomes]
rs28656783	0.94[ASN][1000 genomes]
rs34527763	0.95[ASN][1000 genomes]
rs35960466	0.95[ASN][1000 genomes]
rs3803312	0.99[ASN][1000 genomes]
rs3803315	0.94[ASN][1000 genomes]
rs3803316	0.91[ASN][1000 genomes]
rs3803317	0.94[ASN][1000 genomes]
rs3809457	0.83[ASN][1000 genomes]
rs3809458	0.82[ASN][1000 genomes]
rs3809459	0.82[ASN][1000 genomes]
rs3809460	0.83[ASN][1000 genomes]
rs3809461	0.82[ASN][1000 genomes]
rs4340263	0.99[ASN][1000 genomes]
rs4454893	1.00[ASN][1000 genomes]
rs6576053	0.98[ASN][1000 genomes]
rs6576054	0.87[ASN][1000 genomes]
rs7142224	0.88[ASN][1000 genomes]
rs7145273	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7146030	0.98[ASN][1000 genomes]
rs7147154	0.86[ASN][1000 genomes]
rs7148772	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7148960	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7155060	0.83[ASN][1000 genomes]
rs7155652	0.81[ASN][1000 genomes]
rs8010873	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8014246	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8017525	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530812	chr14:104775571-105364883	Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv1051647	chr14:104983302-105153720	Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
3	nsv542223	chr14:104983302-105153720	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
4	esv1816766	chr14:105007585-105126354	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv902372	chr14:105011436-105200377	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
6	nsv902373	chr14:105012858-105078153	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv470676	chr14:105023512-105100021	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv456445	chr14:105023512-105170003	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
9	nsv566047	chr14:105023512-105170003	Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
10	nsv1053591	chr14:105024558-105475931	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
11	nsv542224	chr14:105024558-105475931	Bivalent Enhancer Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
12	nsv1044032	chr14:105036464-105124567	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv902374	chr14:105045524-105119784	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
14	nsv902375	chr14:105045524-105139894	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
15	nsv902376	chr14:105066444-105100021	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv902377	chr14:105066885-105119784	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
17	esv3338807	chr14:105069932-105072480	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105065200-105070800	Weak transcription	Right Atrium	heart
2	chr14:105069000-105071800	Bivalent/Poised TSS	Brain Anterior Caudate	brain
3	chr14:105069000-105071800	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr14:105069400-105071800	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr14:105070000-105070800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
6	chr14:105070000-105070800	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
7	chr14:105070000-105070800	Flanking Active TSS	Fetal Brain Male	brain
8	chr14:105070000-105070800	Flanking Active TSS	Fetal Brain Female	brain
9	chr14:105070000-105071000	Enhancers	Fetal Heart	heart
10	chr14:105070200-105070800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr14:105070200-105070800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr14:105070200-105070800	Bivalent Enhancer	Fetal Intestine Small	intestine
13	chr14:105070200-105070800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr14:105070200-105070800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
15	chr14:105070200-105071000	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr14:105070200-105071000	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
17	chr14:105070200-105071200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr14:105070200-105071800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
19	chr14:105070400-105070800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
20	chr14:105070400-105070800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
21	chr14:105070400-105070800	Bivalent Enhancer	Primary T cells from cord blood	blood
22	chr14:105070400-105070800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr14:105070400-105070800	Bivalent/Poised TSS	Brain Angular Gyrus	brain
24	chr14:105070400-105070800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
25	chr14:105070400-105070800	Enhancers	Pancreas	Pancrea
26	chr14:105070400-105070800	Enhancers	Right Ventricle	heart
27	chr14:105070400-105071000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr14:105070400-105071000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr14:105070400-105071000	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
30	chr14:105070400-105071000	Bivalent Enhancer	Lung	lung
31	chr14:105070400-105071000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
32	chr14:105070400-105071000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
33	chr14:105070400-105071200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr14:105070400-105071200	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:105070400-105071200	Bivalent Enhancer	Esophagus	oesophagus
36	chr14:105070400-105071200	Bivalent Enhancer	Ovary	ovary
37	chr14:105070400-105071400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
38	chr14:105070400-105071600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
39	chr14:105070400-105071600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
40	chr14:105070400-105071600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
41	chr14:105070600-105070800	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
42	chr14:105070600-105070800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr14:105070600-105070800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
44	chr14:105070600-105070800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
45	chr14:105070600-105071000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
46	chr14:105070600-105071000	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr14:105070600-105071000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr14:105070600-105071000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
49	chr14:105070600-105071000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
50	chr14:105070600-105071000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin

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