Variant report

Variant	rs3803461
Chromosome Location	chr15:74891884-74891885
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74851516..74853661-chr15:74891010..74892976,2	K562	blood:
2	chr15:74885278..74889186-chr15:74890286..74893326,4	K562	blood:
3	chr15:74885692..74889192-chr15:74889315..74893477,4	MCF-7	breast:
4	chr15:74891163..74893467-chr15:74893596..74895699,2	K562	blood:
5	chr15:74882811..74885228-chr15:74890404..74892323,2	K562	blood:

Variant related genes	Relation type
ENSG00000179361	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11853859	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56298217	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7497749	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	esv1812223	chr15:74869438-74948063	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	esv1814078	chr15:74884447-74948063	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv457204	chr15:74885091-74948063	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
7	nsv569991	chr15:74885091-74948063	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
8	nsv542434	chr15:74885329-74929552	Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
9	nsv1047943	chr15:74885329-74940857	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
10	nsv817698	chr15:74889163-75019449	Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74881200-74892200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:74881400-74892200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:74883400-74892000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:74888200-74893800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:74890400-74892000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:74890400-74892000	Flanking Active TSS	Dnd41	blood
7	chr15:74890400-74892000	Flanking Active TSS	K562	blood
8	chr15:74890400-74892200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:74890400-74892200	Flanking Active TSS	Adipose Nuclei	Adipose
10	chr15:74890400-74892400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
11	chr15:74890400-74892400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
12	chr15:74890600-74892200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
13	chr15:74890600-74892200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:74890600-74892200	Active TSS	Fetal Kidney	kidney
15	chr15:74890800-74892000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr15:74890800-74892000	Flanking Active TSS	Colonic Mucosa	Colon
17	chr15:74890800-74892000	Flanking Active TSS	Pancreas	Pancrea
18	chr15:74890800-74892200	Active TSS	NHDF-Ad	bronchial
19	chr15:74890800-74892400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr15:74891200-74892000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr15:74891200-74892000	Flanking Active TSS	Brain Cingulate Gyrus	brain
22	chr15:74891200-74892000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr15:74891200-74892200	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr15:74891200-74892200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr15:74891200-74892200	Flanking Active TSS	Duodenum Mucosa	Duodenum
26	chr15:74891200-74892400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr15:74891200-74892400	Flanking Active TSS	Osteobl	bone
28	chr15:74891200-74893200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr15:74891200-74894200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr15:74891200-74899200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr15:74891400-74892000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr15:74891400-74892000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr15:74891400-74892000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
34	chr15:74891400-74892000	Flanking Active TSS	Fetal Brain Female	brain
35	chr15:74891400-74892000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
36	chr15:74891400-74892200	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr15:74891400-74892200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr15:74891400-74892200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
39	chr15:74891400-74892200	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr15:74891400-74892400	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr15:74891400-74892400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr15:74891400-74892400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr15:74891400-74892400	Flanking Active TSS	Brain Anterior Caudate	brain
44	chr15:74891400-74892400	Flanking Active TSS	Colon Smooth Muscle	Colon
45	chr15:74891400-74892400	Flanking Active TSS	Fetal Heart	heart
46	chr15:74891400-74892400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
47	chr15:74891400-74892400	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr15:74891400-74892600	Enhancers	Lung	lung
49	chr15:74891400-74893200	Enhancers	Esophagus	oesophagus
50	chr15:74891400-74896600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links