Variant report

Variant	rs3803868
Chromosome Location	chr17:60215386-60215387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:60210954..60212712-chr17:60214744..60216666,2	MCF-7	breast:
2	chr17:60213253..60215780-chr20:55677759..55679605,2	MCF-7	breast:
3	chr17:60206656..60210214-chr17:60214708..60217345,4	MCF-7	breast:
4	chr17:60171136..60172772-chr17:60213380..60215934,2	K562	blood:
5	chr17:60211497..60216769-chr17:61037702..61042443,30	MCF-7	breast:
6	chr17:60214128..60216954-chr17:60220160..60222067,2	K562	blood:
7	chr17:60211684..60215729-chr20:55681608..55685353,4	MCF-7	breast:
8	chr17:60211518..60217208-chr17:61037714..61042593,36	MCF-7	breast:
9	chr17:60213343..60215493-chr17:60218630..60220456,2	MCF-7	breast:
10	chr17:60206902..60210217-chr17:60211586..60217357,14	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10451272	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11869394	0.92[ASN][1000 genomes]
rs12940990	0.80[ASN][1000 genomes]
rs12951564	0.88[ASN][1000 genomes]
rs56160705	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56374707	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59348876	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60847923	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62070715	0.86[ASN][1000 genomes]
rs7211918	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72844461	0.81[AMR][1000 genomes]
rs72844470	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72844471	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9675212	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9895121	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062816	chr17:60074670-60470465	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	esv2755037	chr17:60086508-60386211	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv3415630	chr17:60124819-60401635	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv833507	chr17:60174659-60369541	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv469887	chr17:60176679-60381899	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv482579	chr17:60176679-60381899	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv575844	chr17:60199130-60434267	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv1055856	chr17:60202722-60408137	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv543401	chr17:60202722-60408137	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:60214000-60216000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr17:60215000-60215400	Bivalent Enhancer	Esophagus	oesophagus
3	chr17:60215000-60216600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr17:60215000-60216800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr17:60215000-60217000	ZNF genes & repeats	Lung	lung
6	chr17:60215000-60217000	ZNF genes & repeats	Spleen	Spleen
7	chr17:60215200-60215400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr17:60215200-60215400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr17:60215200-60215400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr17:60215200-60215400	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
11	chr17:60215200-60215400	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr17:60215200-60215600	Bivalent/Poised TSS	Fetal Brain Female	brain
13	chr17:60215200-60215600	Enhancers	Pancreas	Pancrea
14	chr17:60215200-60215800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr17:60215200-60216800	Bivalent Enhancer	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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