Variant report

Variant	rs3804285
Chromosome Location	chr6:146872033-146872034
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146869556..146872424-chr6:146874913..146877464,2	K562	blood:
2	chr6:146870262..146872676-chr6:146874501..146877147,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17076125	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17076129	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3804287	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57011270	1.00[EUR][1000 genomes]
rs59272817	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033913	chr6:146572989-147092365	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538466	chr6:146572989-147092365	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv886749	chr6:146679735-147123699	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146865800-146877400	Weak transcription	Placenta	Placenta
2	chr6:146865800-146878200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:146866400-146881800	Weak transcription	Brain Germinal Matrix	brain
4	chr6:146866600-146875800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:146866600-146876200	Weak transcription	Psoas Muscle	Psoas
6	chr6:146866600-146877800	Weak transcription	Gastric	stomach
7	chr6:146866600-146877800	Weak transcription	Lung	lung
8	chr6:146866600-146883800	Weak transcription	Small Intestine	intestine
9	chr6:146866600-146885800	Weak transcription	Pancreas	Pancrea
10	chr6:146866800-146877600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:146866800-146878000	Weak transcription	Brain Substantia Nigra	brain
12	chr6:146867000-146872400	Weak transcription	Left Ventricle	heart
13	chr6:146867000-146876000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:146867000-146877200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:146867000-146877800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:146867000-146880600	Weak transcription	Right Ventricle	heart
17	chr6:146867200-146875600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:146867200-146875600	Weak transcription	Colonic Mucosa	Colon
19	chr6:146867200-146877800	Weak transcription	Primary T cells from cord blood	blood
20	chr6:146867400-146875400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:146867400-146875800	Weak transcription	Brain Hippocampus Middle	brain
22	chr6:146867400-146877400	Weak transcription	Fetal Intestine Small	intestine
23	chr6:146867800-146875200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr6:146868000-146873800	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:146868200-146876800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr6:146868400-146875200	Weak transcription	Right Atrium	heart
27	chr6:146868400-146875600	Weak transcription	HSMMtube	muscle
28	chr6:146868400-146876000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr6:146868600-146873400	Weak transcription	Stomach Mucosa	stomach
30	chr6:146868600-146875800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr6:146868800-146875600	Weak transcription	Hela-S3	cervix
32	chr6:146869400-146872200	Weak transcription	Rectal Smooth Muscle	rectum
33	chr6:146869600-146872200	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr6:146869600-146873800	Strong transcription	Osteobl	bone
35	chr6:146869600-146877000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:146870000-146872200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:146870000-146873400	Genic enhancers	Monocytes-CD14+_RO01746	blood
38	chr6:146870000-146875800	Weak transcription	Colon Smooth Muscle	Colon
39	chr6:146870000-146876800	Strong transcription	HepG2	liver
40	chr6:146870000-146877000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:146870000-146877000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:146870200-146872800	Strong transcription	Liver	Liver
43	chr6:146870200-146873600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:146870200-146877000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr6:146870400-146874000	Strong transcription	HUVEC	blood vessel
46	chr6:146870600-146872400	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr6:146870600-146872400	Strong transcription	Fetal Muscle Leg	muscle
48	chr6:146870600-146872400	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr6:146870600-146872400	Strong transcription	NHLF	lung
50	chr6:146870600-146872800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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