Variant report

Variant rs3804420
Chromosome Location chr4:102181583-102181584
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:102174200-102186000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr4:102174400-102185800 Weak transcription HMEC breast
3 chr4:102177800-102181600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
4 chr4:102177800-102185000 Weak transcription HUES6 Cell Line embryonic stem cell
5 chr4:102178000-102181800 Weak transcription HUES64 Cell Line embryonic stem cell
6 chr4:102178000-102186600 Weak transcription Brain Substantia Nigra brain
7 chr4:102178200-102182200 Weak transcription iPS-18 Cell Line embryonic stem cell
8 chr4:102178200-102183000 Weak transcription Stomach Mucosa stomach
9 chr4:102178200-102183800 Weak transcription HUES48 Cell Line embryonic stem cell
10 chr4:102179000-102186800 Weak transcription Pancreatic Islets Pancreatic Islet
11 chr4:102179200-102181800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
12 chr4:102179400-102181600 Enhancers Primary hematopoietic stem cells short term culture blood
13 chr4:102179600-102181800 Enhancers Primary B cells from cord blood blood
14 chr4:102179600-102182400 Enhancers A549 lung
15 chr4:102179800-102182600 Enhancers Colon Smooth Muscle Colon
16 chr4:102180000-102181600 Enhancers Duodenum Smooth Muscle Duodenum
17 chr4:102180200-102185800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
18 chr4:102180400-102181600 Enhancers Skeletal Muscle Female skeletal muscle
19 chr4:102180400-102181600 Flanking Active TSS GM12878-XiMat blood
20 chr4:102180400-102181800 Enhancers NH-A brain
21 chr4:102180400-102183800 Weak transcription Small Intestine intestine
22 chr4:102180600-102182000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
23 chr4:102180600-102182000 Enhancers NHLF lung
24 chr4:102180600-102183800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
25 chr4:102180600-102185400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr4:102180600-102185800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
27 chr4:102180600-102186200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
28 chr4:102180600-102186200 Weak transcription Pancreas Pancrea
29 chr4:102180600-102191000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
30 chr4:102180600-102192400 Weak transcription Ovary ovary
31 chr4:102180600-102197000 Weak transcription Left Ventricle heart
32 chr4:102180600-102203000 Weak transcription Primary T killer memory cells from peripheral blood blood
33 chr4:102180800-102182000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
34 chr4:102180800-102182000 Weak transcription Fetal Heart heart
35 chr4:102180800-102182200 Enhancers NHEK skin
36 chr4:102180800-102182600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr4:102180800-102186200 Weak transcription Gastric stomach
38 chr4:102181000-102181600 Enhancers Brain Cingulate Gyrus brain
39 chr4:102181000-102181600 Flanking Active TSS HUVEC blood vessel
40 chr4:102181000-102181800 Enhancers Osteobl bone
41 chr4:102181000-102182000 Enhancers Rectal Smooth Muscle rectum
42 chr4:102181000-102182600 Enhancers Adipose Nuclei Adipose
43 chr4:102181000-102182600 Enhancers Fetal Kidney kidney
44 chr4:102181200-102181600 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
45 chr4:102181200-102181600 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr4:102181200-102181600 Active TSS NHDF-Ad bronchial
47 chr4:102181200-102181800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
48 chr4:102181200-102182200 Enhancers Brain Anterior Caudate brain
49 chr4:102181200-102183800 Weak transcription Primary hematopoietic stem cells blood
50 chr4:102181200-102183800 Weak transcription Psoas Muscle Psoas

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