Variant report

Variant	rs3805620
Chromosome Location	chr5:127606864-127606865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1428633	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830482	chr5:127475398-127665377	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv599697	chr5:127563563-127731210	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv830483	chr5:127595570-127705124	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127588800-127613400	Weak transcription	Ovary	ovary
2	chr5:127589000-127670200	Weak transcription	NHDF-Ad	bronchial
3	chr5:127589200-127612200	Weak transcription	Osteobl	bone
4	chr5:127591200-127607400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr5:127592600-127614600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:127592800-127612200	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr5:127592800-127624400	Weak transcription	A549	lung
8	chr5:127592800-127631600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:127593000-127613400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:127593800-127635200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr5:127594800-127613600	Weak transcription	HMEC	breast
12	chr5:127596200-127623800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr5:127598800-127611600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:127598800-127622600	Weak transcription	Fetal Intestine Large	intestine
15	chr5:127598800-127623800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr5:127599000-127611600	Weak transcription	NHEK	skin
17	chr5:127599000-127612000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr5:127599200-127611600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr5:127599200-127613600	Weak transcription	Fetal Kidney	kidney
20	chr5:127599200-127622400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:127599200-127623000	Weak transcription	Fetal Intestine Small	intestine
22	chr5:127599400-127607600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr5:127599400-127612200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr5:127599400-127624200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr5:127599400-127624200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr5:127599600-127608800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr5:127600600-127607600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr5:127600600-127607600	Weak transcription	Fetal Lung	lung
29	chr5:127600600-127607600	Weak transcription	Fetal Muscle Leg	muscle
30	chr5:127600800-127607600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr5:127600800-127624200	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr5:127601000-127607000	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr5:127601000-127609200	Weak transcription	Fetal Stomach	stomach
34	chr5:127603600-127610400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr5:127605200-127614600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr5:127605200-127628800	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr5:127605400-127617200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr5:127605600-127607800	Active TSS	Right Ventricle	heart
39	chr5:127606600-127607400	Strong transcription	NH-A	brain
40	chr5:127606600-127607600	Strong transcription	Fetal Heart	heart
41	chr5:127606600-127607600	Strong transcription	Placenta	Placenta
42	chr5:127606600-127610000	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr5:127606800-127607000	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr5:127606800-127607200	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr5:127606800-127607400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr5:127606800-127607600	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr5:127606800-127607600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr5:127606800-127608000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr5:127606800-127608000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr5:127606800-127608000	Active TSS	Left Ventricle	heart

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