Variant report

Variant	rs3806763
Chromosome Location	chr4:86850705-86850706
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr4:86850125-86850959	A549	lung:	n/a	n/a
2	MAX	chr4:86850024-86850945	A549	lung:	n/a	n/a
3	TCF12	chr4:86850133-86851698	A549	lung:	n/a	chr4:86850792-86850801 chr4:86851083-86851090
4	NR3C1	chr4:86850441-86850792	A549	lung:	n/a	n/a
5	EP300	chr4:86850258-86850902	A549	lung:	n/a	n/a
6	ARID3A	chr4:86850439-86850920	HepG2	liver:	n/a	n/a
7	MAX	chr4:86850103-86850804	A549	lung:	n/a	n/a
8	POLR2A	chr4:86850638-86850736	A549	lung:	n/a	n/a
9	SP1	chr4:86850255-86850901	A549	lung:	n/a	n/a
10	RXRA	chr4:86850406-86850789	HepG2	liver:	n/a	n/a
11	NR3C1	chr4:86850371-86850748	A549	lung:	n/a	n/a
12	NR3C1	chr4:86850447-86850765	A549	lung:	n/a	n/a
13	NR3C1	chr4:86850422-86850860	A549	lung:	n/a	n/a

Variant related genes	Relation type
ARHGAP24	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10006487	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10009525	0.90[EUR][1000 genomes]
rs10028816	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28440876	0.90[EUR][1000 genomes]
rs28509253	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2869407	0.90[EUR][1000 genomes]
rs346497	0.87[ASN][1000 genomes]
rs35017635	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60376563	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62305506	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62305507	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62305508	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62305513	0.83[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs62315531	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62315532	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62315533	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6531878	0.93[EUR][1000 genomes]
rs6531881	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6531883	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6531884	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6820289	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6820395	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6825260	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7670778	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7693059	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7696763	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9790784	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879519	chr4:86786204-86871282	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv879520	chr4:86829529-86918232	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86831200-86851000	Weak transcription	Aorta	Aorta
2	chr4:86843200-86852400	Weak transcription	Esophagus	oesophagus
3	chr4:86844400-86853800	Weak transcription	Gastric	stomach
4	chr4:86845600-86850800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:86846400-86851000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr4:86847000-86853200	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr4:86848400-86851400	Enhancers	Primary B cells from peripheral blood	blood
8	chr4:86848600-86856000	Weak transcription	Primary B cells from cord blood	blood
9	chr4:86848800-86851000	Enhancers	Stomach Mucosa	stomach
10	chr4:86849200-86851000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:86849200-86851000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr4:86849200-86851400	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr4:86849200-86851800	Enhancers	Primary hematopoietic stem cells	blood
14	chr4:86849200-86851800	Enhancers	NHDF-Ad	bronchial
15	chr4:86849400-86851000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr4:86849400-86851000	Weak transcription	Fetal Lung	lung
17	chr4:86849600-86850800	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr4:86849600-86851600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:86849600-86852800	Enhancers	Fetal Thymus	thymus
20	chr4:86849800-86850800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:86849800-86850800	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr4:86849800-86850800	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr4:86849800-86851000	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr4:86849800-86851000	Enhancers	Thymus	Thymus
25	chr4:86849800-86851200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr4:86849800-86851200	Enhancers	Adipose Nuclei	Adipose
27	chr4:86849800-86851400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr4:86849800-86851400	Enhancers	Muscle Satellite Cultured Cells	--
29	chr4:86849800-86851400	Enhancers	Lung	lung
30	chr4:86849800-86851400	Enhancers	Osteobl	bone
31	chr4:86849800-86851600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr4:86849800-86851600	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr4:86849800-86853400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr4:86850000-86850800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr4:86850000-86851000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr4:86850000-86851000	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr4:86850000-86851000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr4:86850000-86851000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr4:86850000-86851000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr4:86850000-86851000	Enhancers	Brain Hippocampus Middle	brain
41	chr4:86850000-86851000	Enhancers	NH-A	brain
42	chr4:86850000-86851200	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr4:86850000-86851200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr4:86850000-86851200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr4:86850000-86851200	Enhancers	Right Atrium	heart
46	chr4:86850000-86851200	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr4:86850000-86851400	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr4:86850000-86851400	Enhancers	HMEC	breast
49	chr4:86850000-86851400	Enhancers	HSMMtube	muscle
50	chr4:86850000-86851600	Enhancers	NHLF	lung

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