Variant report

Variant	rs3808362
Chromosome Location	chr8:102803984-102803985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr8:102803922-102804144	A549	lung:	n/a	n/a
2	RFX5	chr8:102801780-102804495	SK-N-SH	brain:	n/a	chr8:102803283-102803298 chr8:102803283-102803298 chr8:102803283-102803298 chr8:102803282-102803299

Variant related genes	Relation type
NCALD	TF binding region

rs_ID	r²[population]
rs1111931	1.00[AMR][1000 genomes]
rs1557337	1.00[AMR][1000 genomes]
rs3808363	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7813070	1.00[MEX][hapmap];0.87[AMR][1000 genomes]

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102802800-102804000	Flanking Active TSS	Liver	Liver
2	chr8:102803200-102804000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:102803200-102804400	Enhancers	Stomach Mucosa	stomach
4	chr8:102803200-102805000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:102803200-102805000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:102803200-102817800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr8:102803400-102804000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:102803400-102804000	Flanking Active TSS	Fetal Brain Female	brain
9	chr8:102803400-102805000	Enhancers	Psoas Muscle	Psoas
10	chr8:102803600-102804000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr8:102803600-102804000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr8:102803600-102804000	Enhancers	Fetal Intestine Large	intestine
13	chr8:102803600-102804000	Enhancers	Rectal Smooth Muscle	rectum
14	chr8:102803600-102804200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr8:102803600-102804200	Enhancers	Brain Hippocampus Middle	brain
16	chr8:102803600-102804200	Enhancers	Brain Substantia Nigra	brain
17	chr8:102803600-102804200	Enhancers	Fetal Lung	lung
18	chr8:102803600-102804200	Enhancers	Fetal Muscle Leg	muscle
19	chr8:102803600-102804200	Enhancers	Fetal Stomach	stomach
20	chr8:102803600-102804200	Enhancers	Ovary	ovary
21	chr8:102803600-102804200	Enhancers	A549	lung
22	chr8:102803600-102804200	Enhancers	GM12878-XiMat	blood
23	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr8:102803800-102804000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr8:102803800-102804000	Enhancers	Colon Smooth Muscle	Colon
26	chr8:102803800-102804000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr8:102803800-102804200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr8:102803800-102804200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr8:102803800-102804200	Enhancers	Brain Anterior Caudate	brain
30	chr8:102803800-102804200	Enhancers	Brain Cingulate Gyrus	brain
31	chr8:102803800-102804200	Active TSS	Fetal Brain Male	brain
32	chr8:102803800-102804200	Enhancers	Fetal Kidney	kidney
33	chr8:102803800-102804200	Enhancers	Small Intestine	intestine
34	chr8:102803800-102805000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr8:102803800-102805200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr8:102803800-102805400	Enhancers	Cortex derived primary cultured neurospheres	brain

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