Variant report

Variant	rs3809437
Chromosome Location	chr14:37052863-37052864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10483472	0.90[CHB][hapmap];0.92[JPT][hapmap]
rs11156921	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12589672	0.92[JPT][hapmap]
rs12895465	0.82[CHD][hapmap];0.92[JPT][hapmap]
rs17176043	0.82[CHD][hapmap];0.92[JPT][hapmap]
rs17765733	0.90[CHB][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040256	chr14:36501452-37172046	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv542040	chr14:36501452-37172046	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv1037952	chr14:36670484-37294692	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv542042	chr14:36670484-37294692	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv1053685	chr14:36915643-37245920	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv917279	chr14:36953511-37146655	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv949612	chr14:36996206-37121633	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37048000-37054800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr14:37050800-37053800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
3	chr14:37051600-37053400	Bivalent Enhancer	Fetal Stomach	stomach
4	chr14:37051800-37053000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:37051800-37053000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:37051800-37053200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:37052200-37053200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
8	chr14:37052200-37053400	Bivalent Enhancer	Lung	lung
9	chr14:37052200-37053800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:37052600-37053000	Bivalent Enhancer	Brain Cingulate Gyrus	brain
11	chr14:37052600-37053400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
12	chr14:37052800-37053000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
13	chr14:37052800-37053000	Bivalent Enhancer	Brain Hippocampus Middle	brain
14	chr14:37052800-37053000	Bivalent Enhancer	Right Ventricle	heart
15	chr14:37052800-37053000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
16	chr14:37052800-37053400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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