Variant report

Variant	rs3810450
Chromosome Location	chr19:36530562-36530563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:36498583..36500890-chr19:36529481..36531890,2	MCF-7	breast:
2	chr19:36526205..36528558-chr19:36530375..36532258,2	K562	blood:
3	chr19:36487172..36489365-chr19:36529262..36531412,2	MCF-7	breast:
4	chr19:36530533..36533385-chr19:36544790..36546429,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181392	Chromatin interaction
ENSG00000075702	Chromatin interaction
ENSG00000161277	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12462677	1.00[AFR][1000 genomes]
rs17777328	0.84[CHB][hapmap]
rs2239509	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2285425	0.85[ASN][1000 genomes]
rs3810449	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4806247	0.90[JPT][hapmap];1.00[YRI][hapmap]
rs7256169	0.83[JPT][hapmap]
rs9989683	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911638	chr19:36265508-36537959	Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	esv3526489	chr19:36306483-36741945	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
3	esv3526490	chr19:36306483-36741945	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
4	esv1831737	chr19:36324324-36690874	Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
5	nsv911641	chr19:36473677-36536938	Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv833815	chr19:36519803-36624936	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36506400-36544400	Weak transcription	GM12878-XiMat	blood
2	chr19:36506800-36532400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr19:36507000-36532200	Weak transcription	Hela-S3	cervix
4	chr19:36508800-36532400	Weak transcription	NHEK	skin
5	chr19:36515400-36544600	Weak transcription	Pancreas	Pancrea
6	chr19:36516400-36532400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr19:36518800-36532200	Weak transcription	A549	lung
8	chr19:36524000-36532000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr19:36524000-36532000	Weak transcription	Psoas Muscle	Psoas
10	chr19:36524000-36537000	Weak transcription	Small Intestine	intestine
11	chr19:36524200-36531600	Weak transcription	Placenta	Placenta
12	chr19:36524200-36532000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr19:36524200-36532200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr19:36524200-36532200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr19:36524200-36532200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr19:36524200-36532200	Weak transcription	NHLF	lung
17	chr19:36524200-36532400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr19:36524200-36532400	Weak transcription	HSMMtube	muscle
19	chr19:36524200-36533200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr19:36524200-36543800	Weak transcription	Left Ventricle	heart
21	chr19:36524200-36544000	Weak transcription	Primary B cells from cord blood	blood
22	chr19:36524200-36544400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr19:36524200-36544400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr19:36524200-36544400	Weak transcription	Aorta	Aorta
25	chr19:36524400-36532200	Weak transcription	Fetal Kidney	kidney
26	chr19:36524400-36532200	Weak transcription	NHDF-Ad	bronchial
27	chr19:36524400-36532400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr19:36524400-36532400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr19:36524400-36532400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr19:36524400-36532400	Weak transcription	Colon Smooth Muscle	Colon
31	chr19:36524400-36532400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr19:36524400-36533000	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr19:36524400-36534800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr19:36524400-36535000	Weak transcription	Brain Angular Gyrus	brain
35	chr19:36524400-36537200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr19:36524400-36537200	Weak transcription	Brain Cingulate Gyrus	brain
37	chr19:36524400-36543800	Weak transcription	Primary B cells from peripheral blood	blood
38	chr19:36524400-36544000	Weak transcription	Fetal Lung	lung
39	chr19:36524600-36532600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr19:36524600-36537000	Weak transcription	Brain Anterior Caudate	brain
41	chr19:36524800-36530600	Weak transcription	Fetal Brain Female	brain
42	chr19:36525400-36533200	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr19:36525600-36531800	Strong transcription	Fetal Stomach	stomach
44	chr19:36525800-36531000	Strong transcription	Fetal Muscle Leg	muscle
45	chr19:36526400-36544200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr19:36526600-36532200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr19:36526600-36532600	Weak transcription	Liver	Liver
48	chr19:36526600-36540200	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr19:36526600-36544400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr19:36526800-36544400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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