Variant report

Variant	rs3811098
Chromosome Location	chr6:144760304-144760305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12660596	0.82[JPT][hapmap];1.00[AFR][1000 genomes]
rs12661781	1.00[AFR][1000 genomes]
rs12663851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12664200	0.88[CHD][hapmap];0.82[JPT][hapmap]
rs12665589	0.83[CHD][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes]
rs4896714	1.00[AFR][1000 genomes]
rs4896715	1.00[AFR][1000 genomes]
rs4896717	1.00[AFR][1000 genomes]
rs60345197	1.00[AFR][1000 genomes]
rs7738289	0.90[JPT][hapmap]
rs7776211	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1023014	chr6:144717963-144806691	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886739	chr6:144719765-144796516	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144729800-144761400	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:144740800-144761200	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:144740800-144761400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:144740800-144787600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:144741000-144801800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:144741200-144760800	Weak transcription	Fetal Brain Male	brain
7	chr6:144742800-144761200	Weak transcription	Colonic Mucosa	Colon
8	chr6:144743000-144780200	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr6:144744400-144761400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:144744800-144761600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:144744800-144761600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:144752000-144761200	Weak transcription	Fetal Brain Female	brain
13	chr6:144753000-144771200	Weak transcription	Stomach Mucosa	stomach
14	chr6:144755400-144763800	Strong transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:144755400-144764400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:144755400-144770400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:144755400-144781200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:144755600-144761000	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:144755600-144761200	Strong transcription	Primary B cells from peripheral blood	blood
20	chr6:144755600-144761400	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr6:144755600-144762400	Strong transcription	Primary T cells from cord blood	blood
22	chr6:144755600-144780800	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr6:144755800-144761000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:144755800-144761600	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr6:144755800-144764400	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr6:144756000-144761000	Strong transcription	H1 Cell Line	embryonic stem cell
27	chr6:144756000-144763200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr6:144756000-144810600	Weak transcription	Small Intestine	intestine
29	chr6:144756200-144761800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:144756400-144762600	Strong transcription	Placenta	Placenta
31	chr6:144756600-144761400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:144756600-144761400	Strong transcription	Primary B cells from cord blood	blood
33	chr6:144756600-144761400	Strong transcription	Fetal Muscle Trunk	muscle
34	chr6:144756600-144761600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:144756600-144763800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:144756800-144760400	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr6:144756800-144760400	Strong transcription	Thymus	Thymus
38	chr6:144756800-144761000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:144756800-144761200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:144756800-144761600	Strong transcription	Primary hematopoietic stem cells	blood
41	chr6:144756800-144761600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr6:144756800-144762400	Strong transcription	Duodenum Mucosa	Duodenum
43	chr6:144756800-144762600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr6:144756800-144763400	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr6:144756800-144764000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:144756800-144764200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr6:144756800-144766400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr6:144756800-144772600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:144756800-144777200	Strong transcription	HSMM	muscle
50	chr6:144756800-144780200	Strong transcription	Primary T helper cells PMA-I stimulated	--

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