Variant report

Variant	rs38115
Chromosome Location	chr7:78255932-78255933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs161285	0.90[ASN][1000 genomes]
rs191181	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs319861	0.80[AFR][1000 genomes]
rs319862	0.80[AFR][1000 genomes]
rs319863	0.88[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs321975	0.81[JPT][hapmap]
rs38096	0.95[JPT][hapmap];0.84[AMR][1000 genomes]
rs38099	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs38100	0.91[JPT][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs38102	0.84[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs38105	0.84[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs38108	1.00[CEU][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs38109	0.81[YRI][hapmap]
rs38111	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs38113	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs38114	0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs38117	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs38119	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs38120	0.86[YRI][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78219000-78258600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:78236800-78256400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:78240400-78256400	Weak transcription	Fetal Brain Male	brain
4	chr7:78250400-78256600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:78251600-78256400	Weak transcription	Brain Hippocampus Middle	brain
6	chr7:78252400-78256800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:78252600-78256400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:78252600-78266400	Weak transcription	Aorta	Aorta
9	chr7:78253600-78256600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:78253800-78256400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:78254200-78256800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr7:78254200-78268800	Weak transcription	Brain Germinal Matrix	brain
13	chr7:78255200-78256800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:78255400-78256400	Weak transcription	Brain Substantia Nigra	brain
15	chr7:78255800-78257800	Enhancers	Brain Angular Gyrus	brain
16	chr7:78255800-78258600	Enhancers	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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