Variant report

Variant	rs3811589
Chromosome Location	chr2:233875716-233875717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62193981	0.82[EUR][1000 genomes]
rs62193982	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948470	chr2:233166262-233886732	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1005123	chr2:233227729-233920152	Enhancers Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv536173	chr2:233227729-233920152	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv876009	chr2:233799400-233996429	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv876011	chr2:233809244-233912755	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:233864400-233902800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:233872800-233876600	Weak transcription	Fetal Lung	lung
3	chr2:233873400-233876400	Weak transcription	Fetal Muscle Leg	muscle
4	chr2:233874400-233877000	Enhancers	Pancreas	Pancrea
5	chr2:233875000-233876000	Enhancers	Liver	Liver
6	chr2:233875000-233876000	Genic enhancers	Stomach Mucosa	stomach
7	chr2:233875200-233875800	Strong transcription	Fetal Intestine Small	intestine
8	chr2:233875200-233876000	Enhancers	Colonic Mucosa	Colon
9	chr2:233875200-233878000	Enhancers	Spleen	Spleen
10	chr2:233875400-233876000	Flanking Active TSS	Duodenum Mucosa	Duodenum
11	chr2:233875400-233876200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr2:233875400-233876200	Weak transcription	A549	lung
13	chr2:233875400-233876600	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr2:233875600-233876200	Weak transcription	Lung	lung
15	chr2:233875600-233876400	Enhancers	Gastric	stomach
16	chr2:233875600-233876400	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr2:233875600-233877000	Flanking Active TSS	HepG2	liver
18	chr2:233875600-233888000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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