Variant report

Variant	rs3812250
Chromosome Location	chr7:48700374-48700375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10243683	0.87[CHB][hapmap];0.81[CHD][hapmap]
rs10255431	0.82[CHB][hapmap];0.80[JPT][hapmap]
rs12718293	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1317438	0.87[CHB][hapmap];0.80[JPT][hapmap]
rs1318024	0.87[CHB][hapmap];0.83[CHD][hapmap];0.80[JPT][hapmap]
rs17132518	0.87[CHB][hapmap];0.80[JPT][hapmap]
rs1918603	0.87[CHB][hapmap]
rs1918604	0.87[CHB][hapmap];0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606894	chr7:48663637-48718598	ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3812250	SNORA9	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48699600-48701200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:48699800-48700800	Weak transcription	Fetal Brain Male	brain
3	chr7:48700000-48700400	Weak transcription	Fetal Lung	lung
4	chr7:48700200-48700600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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