Variant report
| Variant | rs3812450 |
|---|---|
| Chromosome Location | chr8:69349596-69349597 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs12541312 | 1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs1517129 | 1.00[JPT][hapmap] |
| rs1517130 | 1.00[JPT][hapmap] |
| rs16919092 | 1.00[JPT][hapmap] |
| rs16934487 | 1.00[JPT][hapmap] |
| rs16934510 | 1.00[JPT][hapmap] |
| rs16934519 | 1.00[GIH][hapmap] |
| rs1867633 | 1.00[GIH][hapmap];1.00[JPT][hapmap] |
| rs1980177 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs2255882 | 1.00[JPT][hapmap] |
| rs2591019 | 1.00[JPT][hapmap] |
| rs2591020 | 1.00[JPT][hapmap] |
| rs2591022 | 0.93[ASN][1000 genomes] |
| rs2676633 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs2676634 | 0.93[ASN][1000 genomes] |
| rs2676648 | 1.00[JPT][hapmap] |
| rs2676650 | 1.00[JPT][hapmap] |
| rs2676652 | 1.00[JPT][hapmap] |
| rs2676654 | 1.00[JPT][hapmap] |
| rs2944715 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs56708665 | 0.93[ASN][1000 genomes] |
| rs6999119 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs7000104 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs7005081 | 0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs73260764 | 0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948687 | chr8:69041121-69642540 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1023810 | chr8:69308665-69440129 | Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv539644 | chr8:69308665-69440129 | Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:69342800-69364800 | Weak transcription | Aorta | Aorta |
| 2 | chr8:69346000-69360000 | Weak transcription | Adipose Nuclei | Adipose |
