Variant report

Variant	rs3813012
Chromosome Location	chr16:82032939-82032940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81972632..81975511-chr16:82029375..82034440,5	MCF-7	breast:
2	chr16:82030016..82033170-chr16:82033184..82035673,3	K562	blood:
3	chr16:82020585..82022664-chr16:82031489..82033612,2	MCF-7	breast:
4	chr16:82030016..82033170-chr16:82033184..82036470,3	K562	blood:
5	chr16:82024895..82026648-chr16:82031387..82033365,2	K562	blood:
6	chr16:82031950..82034782-chr16:82038461..82041370,3	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs8191136	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82023600-82036600	Weak transcription	Fetal Kidney	kidney
2	chr16:82027400-82044200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr16:82027600-82033200	Weak transcription	Primary B cells from cord blood	blood
4	chr16:82027800-82041600	Strong transcription	Primary T cells from cord blood	blood
5	chr16:82029400-82041400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr16:82030000-82034000	Strong transcription	Thymus	Thymus
7	chr16:82030000-82034800	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr16:82030000-82035000	Weak transcription	GM12878-XiMat	blood
9	chr16:82030000-82044000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr16:82030200-82034200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr16:82030200-82034800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr16:82030200-82034800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr16:82030400-82033200	Weak transcription	Colonic Mucosa	Colon
14	chr16:82030600-82037800	Weak transcription	Aorta	Aorta
15	chr16:82030600-82044200	Weak transcription	Small Intestine	intestine
16	chr16:82030800-82034800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr16:82030800-82042400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr16:82031000-82033000	Strong transcription	Primary hematopoietic stem cells	blood
19	chr16:82031000-82044400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr16:82031200-82038600	Strong transcription	Duodenum Mucosa	Duodenum
21	chr16:82031400-82034000	Strong transcription	Primary B cells from peripheral blood	blood
22	chr16:82031400-82034000	Strong transcription	Fetal Thymus	thymus
23	chr16:82031400-82034600	Strong transcription	Liver	Liver
24	chr16:82031400-82035000	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr16:82031600-82034200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr16:82031600-82034200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr16:82031600-82034200	Strong transcription	Gastric	stomach
28	chr16:82031600-82034800	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr16:82031800-82034000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr16:82031800-82034400	Weak transcription	Osteobl	bone
31	chr16:82031800-82034600	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr16:82032000-82033000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr16:82032000-82034800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr16:82032000-82038000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr16:82032000-82038400	Strong transcription	Fetal Intestine Large	intestine
36	chr16:82032000-82043400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr16:82032000-82044400	Weak transcription	Colon Smooth Muscle	Colon
38	chr16:82032000-82044400	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr16:82032200-82033800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
40	chr16:82032200-82033800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr16:82032200-82034000	Strong transcription	Fetal Intestine Small	intestine
42	chr16:82032200-82034000	Strong transcription	Pancreas	Pancrea
43	chr16:82032200-82034000	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr16:82032200-82034400	Strong transcription	HMEC	breast
45	chr16:82032200-82039200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr16:82032200-82039400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr16:82032200-82042400	Weak transcription	Rectal Smooth Muscle	rectum
48	chr16:82032200-82042600	Weak transcription	A549	lung
49	chr16:82032400-82044400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr16:82032600-82033600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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