Variant report

Variant	rs3814569
Chromosome Location	chr10:45488943-45488944
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:45478290..45480310-chr10:45486867..45489135,2	MCF-7	breast:
2	chr10:45423081..45426439-chr10:45487238..45490931,4	K562	blood:
3	chr10:45472874..45476114-chr10:45485945..45489321,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165507	Chromatin interaction
ENSG00000107551	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12416304	0.84[AMR][1000 genomes]
rs17157260	1.00[EUR][1000 genomes]
rs17157326	1.00[CEU][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes]
rs2274885	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4948650	1.00[CEU][hapmap];0.84[AMR][1000 genomes]
rs4948939	0.84[AMR][1000 genomes]
rs949608	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv526734	chr10:45458485-45492054	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45474400-45490800	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr10:45474400-45490800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr10:45474800-45490200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr10:45476800-45491400	Weak transcription	Fetal Kidney	kidney
5	chr10:45477800-45489400	Strong transcription	Duodenum Mucosa	Duodenum
6	chr10:45478400-45489000	Weak transcription	NHDF-Ad	bronchial
7	chr10:45478800-45489200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:45478800-45495800	Weak transcription	HMEC	breast
9	chr10:45480800-45489400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:45481200-45489200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:45482000-45489200	Weak transcription	HUVEC	blood vessel
12	chr10:45482200-45490800	Weak transcription	GM12878-XiMat	blood
13	chr10:45482200-45491200	Weak transcription	Fetal Lung	lung
14	chr10:45482400-45495600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:45482800-45489000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr10:45484000-45489200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:45484000-45490400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr10:45484000-45491000	Genic enhancers	Left Ventricle	heart
19	chr10:45484200-45494200	Enhancers	Right Atrium	heart
20	chr10:45484400-45490800	Genic enhancers	Fetal Muscle Leg	muscle
21	chr10:45484600-45490000	Genic enhancers	Right Ventricle	heart
22	chr10:45484600-45494200	Enhancers	Ovary	ovary
23	chr10:45484800-45490000	Genic enhancers	Pancreas	Pancrea
24	chr10:45484800-45491000	Genic enhancers	Fetal Muscle Trunk	muscle
25	chr10:45485200-45490000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
26	chr10:45485200-45493600	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr10:45485400-45490000	Weak transcription	Colon Smooth Muscle	Colon
28	chr10:45485600-45490600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr10:45485800-45489600	Genic enhancers	Adipose Nuclei	Adipose
30	chr10:45486000-45489200	Genic enhancers	Brain Anterior Caudate	brain
31	chr10:45486000-45495600	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr10:45486000-45495600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr10:45486200-45489200	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:45486400-45489200	Genic enhancers	Lung	lung
35	chr10:45486400-45489200	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr10:45486400-45489600	Genic enhancers	HepG2	liver
37	chr10:45486400-45490000	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr10:45486400-45490000	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr10:45486400-45490200	Weak transcription	Fetal Thymus	thymus
40	chr10:45486400-45490400	Genic enhancers	Brain Hippocampus Middle	brain
41	chr10:45486400-45491000	Strong transcription	Fetal Intestine Small	intestine
42	chr10:45486600-45489200	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr10:45486600-45489400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr10:45486600-45489600	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr10:45486600-45489600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
46	chr10:45486600-45490000	Genic enhancers	Stomach Smooth Muscle	stomach
47	chr10:45486800-45489000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr10:45486800-45489200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr10:45487000-45489600	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr10:45487200-45489200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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