Variant report
| Variant | rs3815671 |
|---|---|
| Chromosome Location | chr12:50642314-50642315 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:50616800-50651800 | Weak transcription | Brain Anterior Caudate | brain |
| 2 | chr12:50627600-50644600 | Weak transcription | Primary T helper cells fromperipheralblood | blood |
| 3 | chr12:50633200-50651200 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
| 4 | chr12:50633600-50643400 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
| 5 | chr12:50634200-50643400 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
| 6 | chr12:50634600-50648200 | Weak transcription | Spleen | Spleen |
| 7 | chr12:50635600-50642400 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 8 | chr12:50635600-50646600 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 9 | chr12:50636000-50643000 | Genic enhancers | Fetal Intestine Large | intestine |
| 10 | chr12:50636200-50651200 | Weak transcription | Fetal Kidney | kidney |
| 11 | chr12:50636600-50642400 | Weak transcription | Ovary | ovary |
| 12 | chr12:50636600-50651400 | Weak transcription | Gastric | stomach |
| 13 | chr12:50636600-50651800 | Weak transcription | Stomach Smooth Muscle | stomach |
| 14 | chr12:50636800-50648200 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 15 | chr12:50637200-50645600 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 16 | chr12:50637200-50648200 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 17 | chr12:50637400-50643400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 18 | chr12:50638200-50643000 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
| 19 | chr12:50638200-50643000 | Enhancers | NHLF | lung |
| 20 | chr12:50638400-50643000 | Enhancers | Stomach Mucosa | stomach |
| 21 | chr12:50639000-50642400 | Weak transcription | Colonic Mucosa | Colon |
| 22 | chr12:50639000-50642600 | Weak transcription | Brain Hippocampus Middle | brain |
| 23 | chr12:50639000-50651600 | Weak transcription | Fetal Lung | lung |
| 24 | chr12:50639600-50642400 | Enhancers | HMEC | breast |
| 25 | chr12:50640000-50643000 | Enhancers | Muscle Satellite Cultured Cells | -- |
| 26 | chr12:50640000-50643200 | Enhancers | Skeletal Muscle Male | skeletal muscle |
| 27 | chr12:50640000-50643400 | Enhancers | Psoas Muscle | Psoas |
| 28 | chr12:50640000-50644000 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
| 29 | chr12:50640000-50644000 | Enhancers | Skeletal Muscle Female | skeletal muscle |
| 30 | chr12:50640000-50644200 | Enhancers | Osteobl | bone |
| 31 | chr12:50640200-50642400 | Genic enhancers | Rectal Mucosa Donor 31 | rectum |
| 32 | chr12:50640200-50643600 | Enhancers | NH-A | brain |
| 33 | chr12:50640200-50644400 | Genic enhancers | Fetal Intestine Small | intestine |
| 34 | chr12:50640400-50642600 | Strong transcription | Brain Inferior Temporal Lobe | brain |
| 35 | chr12:50640400-50644000 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
| 36 | chr12:50640400-50651200 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
| 37 | chr12:50640600-50645400 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
| 38 | chr12:50640800-50642400 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 39 | chr12:50640800-50642600 | Weak transcription | Liver | Liver |
| 40 | chr12:50640800-50643400 | Enhancers | NHEK | skin |
| 41 | chr12:50640800-50643600 | Weak transcription | Colon Smooth Muscle | Colon |
| 42 | chr12:50640800-50647400 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 43 | chr12:50641000-50642400 | Weak transcription | Fetal Thymus | thymus |
| 44 | chr12:50641000-50662000 | Weak transcription | Brain Germinal Matrix | brain |
| 45 | chr12:50641200-50642400 | Enhancers | GM12878-XiMat | blood |
| 46 | chr12:50641200-50642600 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 47 | chr12:50641200-50643200 | Enhancers | HepG2 | liver |
| 48 | chr12:50641200-50653200 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 49 | chr12:50641400-50642400 | Weak transcription | Right Atrium | heart |
| 50 | chr12:50641400-50642600 | Strong transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
