Variant report

Variant	rs3815895
Chromosome Location	chr5:74970024-74970025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:74951852..74953716-chr5:74968580..74970630,2	K562	blood:
2	chr5:74969854..74971391-chr5:74974162..74975941,2	K562	blood:
3	chr5:74967624..74970426-chr5:74970966..74973992,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10038319	0.89[ASN][1000 genomes]
rs10066858	0.89[ASN][1000 genomes]
rs10075465	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10515214	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872760	0.89[ASN][1000 genomes]
rs1862219	0.89[ASN][1000 genomes]
rs1862220	0.89[ASN][1000 genomes]
rs2193989	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2193990	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2193991	0.89[ASN][1000 genomes]
rs2216572	0.88[ASN][1000 genomes]
rs2303647	0.89[ASN][1000 genomes]
rs34358	0.81[AFR][1000 genomes]
rs34359	0.81[AFR][1000 genomes]
rs34360	0.81[AFR][1000 genomes]
rs3815894	0.89[ASN][1000 genomes]
rs40060	0.81[AFR][1000 genomes]
rs56676015	0.89[ASN][1000 genomes]
rs6892146	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6893029	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7713211	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs888786	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs888787	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs888897	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv518475	chr5:74863041-75411804	Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv1850196	chr5:74890618-75138443	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv522003	chr5:74947435-74988369	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv830353	chr5:74961520-75152609	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74952800-74981400	Weak transcription	Psoas Muscle	Psoas
2	chr5:74961000-74976800	Weak transcription	Colon Smooth Muscle	Colon
3	chr5:74961000-74987800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr5:74962000-74979400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:74963000-74989800	Weak transcription	Esophagus	oesophagus
6	chr5:74963200-74976600	Weak transcription	HMEC	breast
7	chr5:74964600-74970800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr5:74964800-74989400	Weak transcription	HSMMtube	muscle
9	chr5:74965000-74976600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:74965000-74977000	Weak transcription	Brain Angular Gyrus	brain
11	chr5:74965000-74978600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:74965000-74979800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr5:74965000-74983800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr5:74965000-74991200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr5:74965000-74998000	Weak transcription	Fetal Brain Female	brain
16	chr5:74965200-74977000	Weak transcription	NHLF	lung
17	chr5:74965200-75011800	Weak transcription	Brain Germinal Matrix	brain
18	chr5:74965400-74970200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:74965400-74970200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr5:74965400-74970600	Weak transcription	Brain Hippocampus Middle	brain
21	chr5:74965400-74977000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr5:74965400-74977000	Weak transcription	NH-A	brain
23	chr5:74965400-74978000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr5:74965400-74979400	Weak transcription	Brain Anterior Caudate	brain
25	chr5:74965400-74980600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr5:74965400-74980800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr5:74965400-74981000	Weak transcription	Lung	lung
28	chr5:74965400-74997800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr5:74965400-75012400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr5:74965400-75012400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr5:74965400-75012400	Weak transcription	Right Ventricle	heart
32	chr5:74965600-74970200	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr5:74965600-74970200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr5:74965600-74973000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr5:74965600-74978400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr5:74965600-74979400	Weak transcription	Spleen	Spleen
37	chr5:74965600-74979600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr5:74965600-74980800	Weak transcription	Pancreas	Pancrea
39	chr5:74965600-74998200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr5:74965600-74998200	Weak transcription	Fetal Heart	heart
41	chr5:74965600-75010400	Weak transcription	Gastric	stomach
42	chr5:74965600-75011400	Weak transcription	Small Intestine	intestine
43	chr5:74965800-74970400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr5:74965800-74970400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr5:74965800-74970400	Weak transcription	HSMM	muscle
46	chr5:74965800-74973600	Weak transcription	HepG2	liver
47	chr5:74965800-74976600	Weak transcription	Osteobl	bone
48	chr5:74965800-74991800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr5:74966000-74970800	Weak transcription	K562	blood
50	chr5:74966000-74973600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links