Variant report

Variant	rs3816284
Chromosome Location	chr15:79288559-79288560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:79286840..79288798-chr15:79290749..79294640,3	MCF-7	breast:
2	chr15:79287783..79290330-chr15:79294942..79296932,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11072823	0.92[CEU][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11852934	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12900315	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12902783	0.81[EUR][1000 genomes]
rs12914556	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3784530	0.87[EUR][1000 genomes]
rs3784531	0.88[EUR][1000 genomes]
rs3784533	0.82[EUR][1000 genomes]
rs4778753	0.80[EUR][1000 genomes]
rs6495358	0.84[EUR][1000 genomes]
rs754516	0.96[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs894782	0.92[ASN][1000 genomes]
rs894783	0.94[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv904433	chr15:79243571-79310288	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79276400-79288600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:79276400-79309200	Weak transcription	Right Atrium	heart
3	chr15:79278400-79290400	Enhancers	Fetal Intestine Small	intestine
4	chr15:79279600-79291000	Enhancers	Fetal Intestine Large	intestine
5	chr15:79281600-79290200	Weak transcription	Brain Substantia Nigra	brain
6	chr15:79281800-79296000	Weak transcription	Primary B cells from cord blood	blood
7	chr15:79281800-79296600	Weak transcription	Esophagus	oesophagus
8	chr15:79281800-79296600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr15:79282400-79289200	Weak transcription	HMEC	breast
10	chr15:79282600-79289000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:79282600-79289200	Weak transcription	NH-A	brain
12	chr15:79283000-79295000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:79284200-79288800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:79284600-79289200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:79285200-79290800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr15:79285600-79289000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr15:79285600-79290400	Weak transcription	Brain Anterior Caudate	brain
18	chr15:79285600-79294400	Weak transcription	HSMM	muscle
19	chr15:79285800-79290200	Weak transcription	GM12878-XiMat	blood
20	chr15:79285800-79294600	Weak transcription	Brain Angular Gyrus	brain
21	chr15:79285800-79298400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr15:79286400-79290800	Weak transcription	Placenta	Placenta
23	chr15:79286800-79289200	Weak transcription	HSMMtube	muscle
24	chr15:79286800-79290200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr15:79286800-79290400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr15:79287000-79289200	Enhancers	HepG2	liver
27	chr15:79287000-79290400	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr15:79287000-79290400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr15:79287200-79325800	Weak transcription	Brain Hippocampus Middle	brain
30	chr15:79287800-79289400	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr15:79288000-79288600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr15:79288000-79288600	Enhancers	Fetal Muscle Trunk	muscle
33	chr15:79288000-79288800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr15:79288000-79289400	Enhancers	H1 Cell Line	embryonic stem cell
35	chr15:79288000-79291200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr15:79288000-79293600	Strong transcription	Pancreatic Islets	Pancreatic Islet
37	chr15:79288200-79288600	Enhancers	Placenta Amnion	Placenta Amnion
38	chr15:79288200-79288800	Enhancers	Fetal Lung	lung
39	chr15:79288200-79289000	Enhancers	Spleen	Spleen
40	chr15:79288200-79289400	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr15:79288200-79289600	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr15:79288200-79290800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr15:79288400-79288800	Enhancers	Lung	lung
44	chr15:79288400-79289200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
45	chr15:79288400-79289400	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr15:79288400-79289400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr15:79288400-79289400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr15:79288400-79289600	Enhancers	A549	lung
49	chr15:79288400-79290000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:79288400-79295400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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