Variant report

Variant	rs3816450
Chromosome Location	chr15:83832934-83832935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83824239..83826834-chr15:83830825..83833797,3	MCF-7	breast:
2	chr15:83832074..83835254-chr15:83836409..83839436,3	K562	blood:
3	chr15:83827156..83829042-chr15:83830149..83833522,4	K562	blood:

Variant related genes	Relation type
ENSG00000166503	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10162999	1.00[ASW][hapmap];1.00[CEU][hapmap];0.80[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.93[LWK][hapmap];0.90[MEX][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4842993	0.80[CEU][hapmap];1.00[GIH][hapmap]
rs9630494	0.82[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.93[LWK][hapmap];0.91[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83777200-83834600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:83782600-83833600	Weak transcription	Right Ventricle	heart
3	chr15:83792800-83835200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:83796400-83833000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:83808000-83835600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr15:83813400-83833600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:83813800-83833800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr15:83818600-83835200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:83818800-83835400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr15:83819000-83833800	Weak transcription	Brain Angular Gyrus	brain
11	chr15:83819800-83835000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr15:83820800-83833600	Weak transcription	Osteobl	bone
13	chr15:83820800-83834800	Weak transcription	Fetal Intestine Large	intestine
14	chr15:83821000-83834600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr15:83823000-83833400	Weak transcription	NHLF	lung
16	chr15:83825200-83833800	Weak transcription	Brain Substantia Nigra	brain
17	chr15:83825600-83834800	Weak transcription	Psoas Muscle	Psoas
18	chr15:83825800-83833800	Weak transcription	Aorta	Aorta
19	chr15:83825800-83834000	Weak transcription	Fetal Stomach	stomach
20	chr15:83825800-83835400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:83825800-83847200	Weak transcription	Left Ventricle	heart
22	chr15:83826000-83833800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr15:83826000-83833800	Weak transcription	Brain Anterior Caudate	brain
24	chr15:83826000-83836200	Weak transcription	Colon Smooth Muscle	Colon
25	chr15:83826200-83833600	Weak transcription	Fetal Brain Male	brain
26	chr15:83826400-83833200	Weak transcription	NHDF-Ad	bronchial
27	chr15:83826400-83833400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr15:83826400-83833800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:83826400-83834600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr15:83826600-83833200	Weak transcription	NHEK	skin
31	chr15:83826800-83833200	Weak transcription	Dnd41	blood
32	chr15:83826800-83833400	Weak transcription	A549	lung
33	chr15:83826800-83834600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:83826800-83835200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr15:83826800-83835200	Weak transcription	Stomach Smooth Muscle	stomach
36	chr15:83828000-83833200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr15:83829000-83833000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr15:83829200-83833400	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr15:83829200-83833600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr15:83829400-83833000	Strong transcription	Primary hematopoietic stem cells	blood
41	chr15:83829600-83833800	Weak transcription	GM12878-XiMat	blood
42	chr15:83830000-83833000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr15:83830200-83833800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr15:83830200-83838600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr15:83831400-83833400	Enhancers	Primary T cells from cord blood	blood
46	chr15:83831600-83833600	Weak transcription	K562	blood
47	chr15:83831800-83833400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr15:83832000-83833600	Weak transcription	Fetal Lung	lung
49	chr15:83832200-83833200	Weak transcription	HMEC	breast
50	chr15:83832200-83833400	Weak transcription	Fetal Thymus	thymus

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