Variant report

Variant	rs3816828
Chromosome Location	chr17:28598717-28598718
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:28597839..28600362-chr17:28660572..28663386,3	K562	blood:

Variant related genes	Relation type
ENSG00000182271	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1050565	0.94[JPT][hapmap]
rs11867581	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12939390	0.94[JPT][hapmap]
rs12949747	0.94[JPT][hapmap]
rs13341611	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1487971	0.94[CHB][hapmap];0.82[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17767256	0.94[JPT][hapmap]
rs2321705	0.84[ASN][1000 genomes]
rs3103305	0.84[ASN][1000 genomes]
rs3110094	0.81[ASN][1000 genomes]
rs3110095	0.81[ASN][1000 genomes]
rs3110452	0.94[JPT][hapmap]
rs3110453	0.84[ASN][1000 genomes]
rs33980254	0.94[JPT][hapmap]
rs3764449	0.94[JPT][hapmap]
rs3794806	0.94[JPT][hapmap]
rs6505165	1.00[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6505169	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6505171	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6505173	0.85[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7208052	0.94[JPT][hapmap]
rs7210085	1.00[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7214014	0.85[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7214248	0.94[JPT][hapmap]
rs7214991	0.94[CHB][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7215330	1.00[CHB][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7223821	0.94[JPT][hapmap]
rs7342921	0.94[JPT][hapmap]
rs7342929	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8072345	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8073378	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8080300	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9896548	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:28566600-28618000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:28570400-28611600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr17:28571400-28618000	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr17:28572200-28607000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr17:28573800-28615400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr17:28574000-28616800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr17:28574600-28604600	Strong transcription	Primary T helper cells PMA-I stimulated	--
8	chr17:28576200-28599200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr17:28576200-28599400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr17:28576200-28618000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr17:28579200-28616200	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr17:28580600-28599200	Weak transcription	NHLF	lung
13	chr17:28583000-28602800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr17:28583000-28616600	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr17:28583000-28616600	Strong transcription	Fetal Thymus	thymus
16	chr17:28583600-28604800	Strong transcription	Fetal Intestine Large	intestine
17	chr17:28583600-28616400	Strong transcription	Dnd41	blood
18	chr17:28583800-28601800	Strong transcription	Primary B cells from peripheral blood	blood
19	chr17:28583800-28604600	Strong transcription	K562	blood
20	chr17:28583800-28605000	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr17:28584000-28601600	Strong transcription	GM12878-XiMat	blood
22	chr17:28585800-28602000	Strong transcription	Placenta	Placenta
23	chr17:28586000-28617400	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr17:28586200-28599400	Weak transcription	Right Ventricle	heart
25	chr17:28586200-28600000	Weak transcription	Gastric	stomach
26	chr17:28586400-28601800	Strong transcription	HSMM	muscle
27	chr17:28586600-28600000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr17:28586600-28605000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr17:28587800-28601800	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr17:28588200-28615000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr17:28589200-28616400	Strong transcription	Fetal Muscle Trunk	muscle
32	chr17:28589600-28616600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr17:28589800-28604600	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr17:28590000-28603200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr17:28590400-28612200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr17:28591000-28601800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr17:28591200-28613400	Weak transcription	Pancreas	Pancrea
38	chr17:28591200-28617200	Weak transcription	Hela-S3	cervix
39	chr17:28591400-28602000	Strong transcription	Adipose Nuclei	Adipose
40	chr17:28591800-28602400	Weak transcription	Stomach Mucosa	stomach
41	chr17:28591800-28616400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr17:28592400-28601800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr17:28592400-28617200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr17:28592600-28599400	Weak transcription	Aorta	Aorta
45	chr17:28592600-28615200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr17:28593400-28604800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr17:28594000-28599400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr17:28594200-28599400	Weak transcription	Esophagus	oesophagus
49	chr17:28595400-28599400	Weak transcription	Fetal Heart	heart
50	chr17:28596200-28601400	Strong transcription	Thymus	Thymus

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