Variant report

Variant	rs3817142
Chromosome Location	chr11:119547487-119547488
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr11:119547341-119547678	MCF10A-Er-Src	breast:	n/a	chr11:119547500-119547510 chr11:119547500-119547510 chr11:119547502-119547513 chr11:119547499-119547511 chr11:119547500-119547510 chr11:119547501-119547509 chr11:119547499-119547510
2	FOSL1	chr11:119547277-119547794	HCT-116	colon:	n/a	chr11:119547500-119547510 chr11:119547500-119547510 chr11:119547502-119547513 chr11:119547499-119547511 chr11:119547500-119547510 chr11:119547501-119547509
3	FOS	chr11:119547343-119547674	MCF10A-Er-Src	breast:	n/a	chr11:119547500-119547510 chr11:119547500-119547510 chr11:119547502-119547513 chr11:119547499-119547511 chr11:119547500-119547510 chr11:119547501-119547509 chr11:119547499-119547510
4	FOS	chr11:119547275-119547944	HUVEC	blood vessel:	n/a	chr11:119547500-119547510 chr11:119547500-119547510 chr11:119547502-119547513 chr11:119547499-119547511 chr11:119547500-119547510 chr11:119547501-119547509 chr11:119547499-119547510
5	FOSL1	chr11:119547238-119547837	HCT-116	colon:	n/a	chr11:119547500-119547510 chr11:119547500-119547510 chr11:119547502-119547513 chr11:119547499-119547511 chr11:119547500-119547510 chr11:119547501-119547509
6	JUN	chr11:119547345-119547720	HUVEC	blood vessel:	n/a	chr11:119547500-119547510 chr11:119547500-119547510 chr11:119547502-119547513 chr11:119547499-119547511 chr11:119547500-119547510 chr11:119547501-119547509
7	FOSL2	chr11:119547251-119547736	SK-N-SH	brain:	n/a	chr11:119547500-119547510 chr11:119547500-119547510 chr11:119547502-119547513 chr11:119547499-119547511 chr11:119547500-119547510 chr11:119547501-119547509
8	STAT3	chr11:119547476-119547519	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr11:119547339-119547680	MCF10A-Er-Src	breast:	n/a	chr11:119547500-119547510 chr11:119547500-119547510 chr11:119547502-119547513 chr11:119547499-119547511 chr11:119547500-119547510 chr11:119547501-119547509 chr11:119547499-119547510
10	POLR2A	chr11:119547235-119547792	HUVEC	blood vessel:	n/a	n/a
11	FOS	chr11:119547334-119547680	MCF10A-Er-Src	breast:	n/a	chr11:119547500-119547510 chr11:119547500-119547510 chr11:119547502-119547513 chr11:119547499-119547511 chr11:119547500-119547510 chr11:119547501-119547509 chr11:119547499-119547510
12	FOSL2	chr11:119547204-119547822	SK-N-SH	brain:	n/a	chr11:119547500-119547510 chr11:119547500-119547510 chr11:119547502-119547513 chr11:119547499-119547511 chr11:119547500-119547510 chr11:119547501-119547509
13	STAT3	chr11:119547425-119547655	MCF10A-Er-Src	breast:	n/a	n/a
14	POLR2A	chr11:119547424-119547685	HUVEC	blood vessel:	n/a	n/a
15	GATA2	chr11:119547408-119547715	HUVEC	blood vessel:	n/a	chr11:119547502-119547511 chr11:119547499-119547508

Variant related genes	Relation type
PVRL1	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12577411	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv984471	chr11:119505802-119568473	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv898422	chr11:119518006-119601779	Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119535200-119552600	Weak transcription	HepG2	liver
2	chr11:119541800-119548600	Strong transcription	H9 Cell Line	embryonic stem cell
3	chr11:119541800-119548600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr11:119541800-119548800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:119541800-119549000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:119542200-119547800	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:119542200-119548600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
8	chr11:119542200-119551400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:119542600-119548400	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:119543000-119548400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:119543000-119548800	Weak transcription	Ovary	ovary
12	chr11:119543000-119551400	Weak transcription	Fetal Heart	heart
13	chr11:119543000-119551400	Weak transcription	Right Atrium	heart
14	chr11:119543200-119548400	Strong transcription	H1 Cell Line	embryonic stem cell
15	chr11:119543200-119551600	Weak transcription	Colon Smooth Muscle	Colon
16	chr11:119543400-119547800	Weak transcription	Fetal Kidney	kidney
17	chr11:119543400-119551000	Weak transcription	Stomach Mucosa	stomach
18	chr11:119543600-119547600	Weak transcription	Liver	Liver
19	chr11:119543600-119549400	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr11:119543600-119551400	Weak transcription	Fetal Brain Male	brain
21	chr11:119543800-119549400	Strong transcription	Gastric	stomach
22	chr11:119544000-119548200	Strong transcription	Fetal Intestine Large	intestine
23	chr11:119544000-119549200	Strong transcription	Brain Cingulate Gyrus	brain
24	chr11:119544000-119549400	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:119544200-119548200	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr11:119544200-119548400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
27	chr11:119544200-119548600	Strong transcription	Brain Germinal Matrix	brain
28	chr11:119544200-119549400	Strong transcription	Right Ventricle	heart
29	chr11:119544400-119549600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:119544600-119548200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:119544600-119548200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:119544600-119548600	Strong transcription	Fetal Brain Female	brain
33	chr11:119544600-119549400	Strong transcription	Brain Angular Gyrus	brain
34	chr11:119544800-119547800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr11:119544800-119548000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:119544800-119548400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr11:119544800-119548600	Strong transcription	Fetal Intestine Small	intestine
38	chr11:119544800-119548600	Strong transcription	Fetal Stomach	stomach
39	chr11:119544800-119549000	Strong transcription	Placenta	Placenta
40	chr11:119545000-119547600	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr11:119545000-119548400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:119545000-119549400	Strong transcription	Brain Substantia Nigra	brain
43	chr11:119545000-119551200	Weak transcription	Aorta	Aorta
44	chr11:119545200-119548200	Strong transcription	Left Ventricle	heart
45	chr11:119545200-119549200	Strong transcription	Adipose Nuclei	Adipose
46	chr11:119545400-119548000	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr11:119545400-119548400	Weak transcription	Primary hematopoietic stem cells	blood
48	chr11:119545600-119549400	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr11:119545800-119548600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr11:119545800-119549600	Strong transcription	Duodenum Mucosa	Duodenum

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