Variant report

Variant	rs3817524
Chromosome Location	chr3:133526403-133526404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133380350..133382601-chr3:133523415..133526726,4	K562	blood:
2	chr3:133522634..133526763-chr3:133529104..133532905,8	K562	blood:
3	chr3:133524847..133526590-chr3:134204244..134205959,2	MCF-7	breast:
4	chr3:133523642..133526680-chr3:133527233..133530883,4	K562	blood:
5	chr3:133379614..133382648-chr3:133523517..133526970,4	MCF-7	breast:
6	chr3:133378019..133382399-chr3:133522860..133528810,6	K562	blood:
7	chr3:133523551..133526872-chr3:133527016..133531055,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182923	Chromatin interaction
ENSG00000242337	Chromatin interaction
ENSG00000163781	Chromatin interaction
ENSG00000144867	Chromatin interaction
ENSG00000129055	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1107413	1.00[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs13321680	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13324779	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1464937	0.87[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1534166	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs56090943	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7355929	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9810872	0.89[ASN][1000 genomes]
rs9853615	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9876158	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9881405	1.00[CHB][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877506	chr3:133423473-133569777	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv4018	chr3:133485867-133530668	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133523800-133526800	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr3:133525400-133526600	Weak transcription	Placenta	Placenta
3	chr3:133525400-133527400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr3:133525400-133528400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:133525400-133529800	Weak transcription	Lung	lung
6	chr3:133525400-133532800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:133525400-133532800	Weak transcription	Esophagus	oesophagus
8	chr3:133525400-133533600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:133525400-133533600	Weak transcription	Spleen	Spleen
10	chr3:133525400-133539000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:133525600-133526600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr3:133525600-133526600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:133525600-133526600	Weak transcription	Primary B cells from peripheral blood	blood
14	chr3:133525600-133526600	Weak transcription	HSMM	muscle
15	chr3:133525600-133526800	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr3:133525600-133527000	Enhancers	Primary T cells from cord blood	blood
17	chr3:133525600-133527200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr3:133525600-133527400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr3:133525600-133527400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr3:133525600-133527600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr3:133525600-133528000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr3:133525600-133528000	Weak transcription	Fetal Thymus	thymus
23	chr3:133525600-133528000	Weak transcription	Left Ventricle	heart
24	chr3:133525600-133528800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr3:133525600-133529000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr3:133525600-133529000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr3:133525600-133529800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr3:133525600-133529800	Weak transcription	Aorta	Aorta
29	chr3:133525600-133529800	Weak transcription	Thymus	Thymus
30	chr3:133525600-133531600	Weak transcription	Colonic Mucosa	Colon
31	chr3:133525600-133532800	Weak transcription	Ovary	ovary
32	chr3:133525600-133533600	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr3:133525600-133533600	Weak transcription	Pancreas	Pancrea
34	chr3:133525600-133533800	Weak transcription	Fetal Kidney	kidney
35	chr3:133525600-133533800	Weak transcription	Psoas Muscle	Psoas
36	chr3:133525600-133534200	Weak transcription	Right Ventricle	heart
37	chr3:133525600-133534400	Weak transcription	Brain Substantia Nigra	brain
38	chr3:133525600-133538400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr3:133525600-133539000	Weak transcription	Gastric	stomach
40	chr3:133525600-133539200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr3:133525600-133541000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr3:133525800-133526600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr3:133525800-133526600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr3:133525800-133526600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr3:133525800-133526600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr3:133525800-133526600	Enhancers	Liver	Liver
47	chr3:133525800-133526600	Weak transcription	Brain Anterior Caudate	brain
48	chr3:133525800-133526600	Weak transcription	Fetal Muscle Leg	muscle
49	chr3:133525800-133526600	Weak transcription	A549	lung
50	chr3:133525800-133526800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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