Variant report

Variant	rs3817624
Chromosome Location	chr19:36398899-36398900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:36389776..36392991-chr19:36393581..36401271,10	K562	blood:

Variant related genes	Relation type
ENSG00000167604	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3814995	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911638	chr19:36265508-36537959	Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv3526489	chr19:36306483-36741945	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
4	esv3526490	chr19:36306483-36741945	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
5	esv1831737	chr19:36324324-36690874	Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
6	nsv833812	chr19:36331913-36507594	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv833813	chr19:36341181-36499431	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36394800-36404000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr19:36395000-36400000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr19:36395000-36400200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr19:36395000-36402800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr19:36395200-36399800	Weak transcription	Dnd41	blood
6	chr19:36395200-36400200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr19:36395600-36400200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr19:36395600-36401600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr19:36396200-36399000	Weak transcription	Primary B cells from peripheral blood	blood
10	chr19:36396200-36399400	Weak transcription	Primary T cells from cord blood	blood
11	chr19:36396400-36399200	Weak transcription	Thymus	Thymus
12	chr19:36396400-36399800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr19:36396400-36399800	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr19:36396400-36400000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr19:36397200-36400000	Enhancers	GM12878-XiMat	blood
16	chr19:36397400-36400600	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr19:36397400-36401000	Enhancers	K562	blood
18	chr19:36397600-36401200	Weak transcription	Osteobl	bone
19	chr19:36397800-36399000	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
20	chr19:36397800-36399200	Active TSS	Liver	Liver
21	chr19:36397800-36399400	Active TSS	Duodenum Mucosa	Duodenum
22	chr19:36398000-36399000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr19:36398000-36399000	Active TSS	Colon Smooth Muscle	Colon
24	chr19:36398000-36399200	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr19:36398000-36399200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr19:36398000-36399200	Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr19:36398000-36399400	Active TSS	Fetal Muscle Leg	muscle
28	chr19:36398000-36399400	Active TSS	Rectal Mucosa Donor 29	rectum
29	chr19:36398000-36399600	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr19:36398000-36400200	Flanking Active TSS	Primary B cells from cord blood	blood
31	chr19:36398000-36400200	Active TSS	Brain Hippocampus Middle	brain
32	chr19:36398200-36399200	Active TSS	Brain Inferior Temporal Lobe	brain
33	chr19:36398200-36399200	Active TSS	Colonic Mucosa	Colon
34	chr19:36398200-36399200	Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr19:36398200-36399200	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
36	chr19:36398200-36399200	Active TSS	Fetal Intestine Small	intestine
37	chr19:36398200-36399200	Active TSS	Placenta	Placenta
38	chr19:36398200-36399200	Active TSS	Rectal Smooth Muscle	rectum
39	chr19:36398200-36399400	Active TSS	Adipose Nuclei	Adipose
40	chr19:36398200-36399400	Active TSS	Stomach Smooth Muscle	stomach
41	chr19:36398200-36400200	Weak transcription	HSMM	muscle
42	chr19:36398400-36399200	Active TSS	Brain Anterior Caudate	brain
43	chr19:36398400-36399200	Active TSS	Fetal Intestine Large	intestine
44	chr19:36398400-36399200	Active TSS	Left Ventricle	heart
45	chr19:36398400-36399200	Active TSS	Pancreas	Pancrea
46	chr19:36398400-36399200	Active TSS	Rectal Mucosa Donor 31	rectum
47	chr19:36398400-36399200	Active TSS	Spleen	Spleen
48	chr19:36398400-36399400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
49	chr19:36398400-36399400	Active TSS	Brain Substantia Nigra	brain
50	chr19:36398400-36399800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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