Variant report

Variant	rs3818910
Chromosome Location	chr10:99342563-99342564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99341160..99342712-chr10:99360184..99361949,2	MCF-7	breast:
2	chr10:99341781..99343970-chr10:99356673..99358698,2	MCF-7	breast:
3	chr10:99329733..99337149-chr10:99338392..99346753,19	MCF-7	breast:
4	chr10:99331113..99332849-chr10:99340895..99343387,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165887	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10748699	0.90[CEU][hapmap]
rs10882959	0.90[CEU][hapmap]
rs10882962	0.90[CEU][hapmap]
rs10882963	0.90[CEU][hapmap]
rs11189274	0.85[CEU][hapmap]
rs11189275	0.90[CEU][hapmap]
rs11189284	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11814566	0.81[CEU][hapmap]
rs12219064	0.95[CEU][hapmap]
rs12221474	0.95[CEU][hapmap]
rs12243136	0.86[CEU][hapmap]
rs1417408	0.85[CEU][hapmap]
rs1572860	0.90[CEU][hapmap]
rs2282372	0.81[CEU][hapmap]
rs2282373	0.80[CEU][hapmap]
rs3814554	0.86[CEU][hapmap]
rs7094973	0.95[CEU][hapmap]
rs7902642	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
4	nsv818782	chr10:99337572-99350128	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv971896	chr10:99338341-99349551	Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99334800-99343400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:99335000-99343400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:99335200-99343400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:99336000-99348800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr10:99336200-99343400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:99336200-99343400	Weak transcription	Psoas Muscle	Psoas
7	chr10:99337800-99343000	Weak transcription	A549	lung
8	chr10:99338400-99343400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:99338400-99343800	Weak transcription	Lung	lung
10	chr10:99338600-99343800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:99338800-99343200	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:99338800-99343400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr10:99340000-99343000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
14	chr10:99340000-99343600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
15	chr10:99340400-99344400	Weak transcription	Pancreas	Pancrea
16	chr10:99340600-99343600	Weak transcription	Placenta	Placenta
17	chr10:99340600-99343600	Weak transcription	Hela-S3	cervix
18	chr10:99341200-99343400	Weak transcription	Right Atrium	heart
19	chr10:99341400-99343400	Weak transcription	Adipose Nuclei	Adipose
20	chr10:99342000-99342600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:99342000-99342800	Enhancers	Right Ventricle	heart
22	chr10:99342000-99343400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:99342200-99342600	Active TSS	Gastric	stomach
24	chr10:99342200-99342800	Active TSS	Spleen	Spleen
25	chr10:99342400-99344200	Enhancers	Left Ventricle	heart

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