Variant report

Variant	rs3819397
Chromosome Location	chr6:15474151-15474152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15469193..15474455-chr6:15475135..15479397,6	K562	blood:
2	chr6:15462939..15466980-chr6:15472777..15475550,3	K562	blood:
3	chr6:14822109..14824078-chr6:15473056..15474795,2	K562	blood:
4	chr6:15473669..15476004-chr6:15478722..15480440,2	MCF-7	breast:
5	chr6:15473996..15477838-chr6:15479843..15483274,5	K562	blood:
6	chr6:15243958..15245577-chr6:15473662..15475608,2	MCF-7	breast:
7	chr6:15456242..15458163-chr6:15473643..15476148,2	K562	blood:

Variant related genes	Relation type
ENSG00000271888	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2064099	0.95[ASN][1000 genomes]
rs9464792	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15435800-15487600	Weak transcription	Colonic Mucosa	Colon
2	chr6:15444600-15477400	Weak transcription	Hela-S3	cervix
3	chr6:15446600-15479800	Weak transcription	Gastric	stomach
4	chr6:15448200-15479800	Weak transcription	Pancreas	Pancrea
5	chr6:15452400-15475800	Weak transcription	Aorta	Aorta
6	chr6:15453000-15481000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:15455400-15475600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:15455400-15475600	Weak transcription	Esophagus	oesophagus
9	chr6:15457000-15480800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:15458400-15484200	Weak transcription	Small Intestine	intestine
11	chr6:15458800-15474600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:15460800-15480000	Weak transcription	Stomach Mucosa	stomach
13	chr6:15461600-15491000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr6:15463000-15479800	Weak transcription	Fetal Brain Male	brain
15	chr6:15463200-15476600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:15463800-15476400	Weak transcription	Ovary	ovary
17	chr6:15463800-15479800	Weak transcription	Brain Germinal Matrix	brain
18	chr6:15464800-15479800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:15465600-15480000	Weak transcription	Fetal Brain Female	brain
20	chr6:15466600-15475000	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr6:15468400-15476000	Strong transcription	Primary B cells from cord blood	blood
22	chr6:15468400-15478200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:15468600-15474200	Strong transcription	Thymus	Thymus
24	chr6:15468600-15474400	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr6:15468600-15475600	Strong transcription	Primary B cells from peripheral blood	blood
26	chr6:15468600-15476400	Strong transcription	H9 Cell Line	embryonic stem cell
27	chr6:15468600-15476600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr6:15468600-15476800	Strong transcription	Primary T cells from cord blood	blood
29	chr6:15468800-15476200	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr6:15468800-15476200	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr6:15468800-15476200	Strong transcription	Dnd41	blood
32	chr6:15468800-15476800	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr6:15468800-15477600	Strong transcription	HepG2	liver
34	chr6:15468800-15478400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:15469000-15475600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr6:15469200-15474600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr6:15469400-15474800	Weak transcription	Colon Smooth Muscle	Colon
38	chr6:15469400-15476400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr6:15469400-15480400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr6:15469600-15474600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr6:15469600-15476400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:15469600-15481200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr6:15469800-15474800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr6:15470000-15478800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:15470000-15480000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:15470200-15475000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr6:15470200-15476400	Weak transcription	Fetal Muscle Trunk	muscle
48	chr6:15470200-15481600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr6:15470800-15475400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr6:15470800-15475600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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