Variant report

Variant	rs3819926
Chromosome Location	chr14:65278838-65278839
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65277232..65280033-chr14:65282761..65285500,2	K562	blood:
2	chr14:65272282..65274917-chr14:65276747..65279585,3	MCF-7	breast:
3	chr14:65277012..65279829-chr14:65281004..65282816,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2269298	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2277503	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3825645	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs45617438	0.81[EUR][1000 genomes]
rs74056019	0.84[EUR][1000 genomes]
rs74056021	0.84[EUR][1000 genomes]
rs74056022	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516768	chr14:65277890-65279944	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv521286	chr14:65277890-65281944	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65254000-65282600	Weak transcription	Spleen	Spleen
2	chr14:65262000-65289800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:65268400-65290200	Weak transcription	Brain Germinal Matrix	brain
4	chr14:65271400-65289800	Weak transcription	Brain Anterior Caudate	brain
5	chr14:65273000-65279200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr14:65273200-65279000	Weak transcription	Pancreas	Pancrea
7	chr14:65273400-65279000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr14:65273800-65279000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr14:65273800-65287200	Weak transcription	K562	blood
10	chr14:65274600-65279000	Weak transcription	Fetal Thymus	thymus
11	chr14:65274600-65284600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr14:65274800-65279000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr14:65274800-65279000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr14:65274800-65279000	Weak transcription	Lung	lung
15	chr14:65274800-65279000	Weak transcription	Right Atrium	heart
16	chr14:65274800-65279200	Weak transcription	Fetal Heart	heart
17	chr14:65275000-65281800	Weak transcription	Right Ventricle	heart
18	chr14:65275800-65279000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr14:65275800-65290000	Weak transcription	Psoas Muscle	Psoas
20	chr14:65277400-65279000	Weak transcription	Fetal Muscle Leg	muscle
21	chr14:65278000-65279600	Enhancers	Hela-S3	cervix
22	chr14:65278200-65279200	Enhancers	A549	lung
23	chr14:65278400-65279000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr14:65278400-65279000	Enhancers	NHEK	skin
25	chr14:65278400-65279200	Enhancers	Liver	Liver
26	chr14:65278400-65279400	Enhancers	HMEC	breast
27	chr14:65278400-65279600	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr14:65278400-65280800	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr14:65278800-65279000	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr14:65278800-65279000	Enhancers	Pancreatic Islets	Pancreatic Islet
31	chr14:65278800-65279000	Enhancers	Placenta	Placenta
32	chr14:65278800-65279200	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr14:65278800-65279400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr14:65278800-65279400	Enhancers	Aorta	Aorta
35	chr14:65278800-65279600	Enhancers	Left Ventricle	heart

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