Variant report

Variant rs3820856
Chromosome Location chr2:54898115-54898116
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54861800-54898600 Strong transcription Primary T regulatory cells fromperipheralblood blood
2 chr2:54862600-54898400 Strong transcription Primary T cells fromperipheralblood blood
3 chr2:54863000-54898600 Strong transcription Primary T helper cells fromperipheralblood blood
4 chr2:54863000-54899400 Strong transcription Primary T cells from cord blood blood
5 chr2:54863800-54898600 Strong transcription Primary T helper naive cells fromperipheralblood blood
6 chr2:54865400-54898400 Strong transcription Primary T killer naive cells fromperipheralblood blood
7 chr2:54865800-54898200 Strong transcription Primary mononuclear cells fromperipheralblood Blood
8 chr2:54867200-54898200 Strong transcription Primary T helper cells PMA-I stimulated --
9 chr2:54868800-54898600 Strong transcription iPS-18 Cell Line embryonic stem cell
10 chr2:54869600-54898600 Strong transcription Fetal Thymus thymus
11 chr2:54879600-54898400 Strong transcription GM12878-XiMat blood
12 chr2:54880200-54898400 Strong transcription H1 Cell Line embryonic stem cell
13 chr2:54880200-54898400 Strong transcription Thymus Thymus
14 chr2:54883000-54899400 Weak transcription Pancreatic Islets Pancreatic Islet
15 chr2:54889200-54898600 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr2:54890800-54898200 Genic enhancers Brain Inferior Temporal Lobe brain
17 chr2:54891000-54899400 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
18 chr2:54891200-54899800 Weak transcription ES-WA7 Cell Line embryonic stem cell
19 chr2:54892400-54898200 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
20 chr2:54892400-54898200 Genic enhancers Adipose Nuclei Adipose
21 chr2:54893000-54898600 Strong transcription iPS-20b Cell Line embryonic stem cell
22 chr2:54893200-54898600 Strong transcription HUES48 Cell Line embryonic stem cell
23 chr2:54893200-54898600 Strong transcription HUES6 Cell Line embryonic stem cell
24 chr2:54893200-54898800 Strong transcription HUES64 Cell Line embryonic stem cell
25 chr2:54893400-54898600 Strong transcription Rectal Mucosa Donor 31 rectum
26 chr2:54893800-54898600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
27 chr2:54893800-54899600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
28 chr2:54893800-54900200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
29 chr2:54894000-54898600 Strong transcription HUVEC blood vessel
30 chr2:54894000-54899400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr2:54894000-54899600 Strong transcription NH-A brain
32 chr2:54894400-54898600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
33 chr2:54894600-54898800 Strong transcription Fetal Brain Female brain
34 chr2:54894600-54902200 Weak transcription Psoas Muscle Psoas
35 chr2:54894800-54900400 Weak transcription Small Intestine intestine
36 chr2:54894800-54900600 Weak transcription ES-I3 Cell Line embryonic stem cell
37 chr2:54895200-54898800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
38 chr2:54895200-54900400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
39 chr2:54895400-54898400 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
40 chr2:54895400-54898600 Strong transcription Cortex derived primary cultured neurospheres brain
41 chr2:54895400-54898600 Strong transcription Duodenum Mucosa Duodenum
42 chr2:54895400-54900200 Strong transcription Fetal Muscle Leg muscle
43 chr2:54895400-54900400 Enhancers Primary monocytes fromperipheralblood blood
44 chr2:54895600-54898400 Strong transcription Fetal Stomach stomach
45 chr2:54895600-54899400 Strong transcription Fetal Muscle Trunk muscle
46 chr2:54895800-54899800 Weak transcription Right Atrium heart
47 chr2:54895800-54900000 Weak transcription iPS-15b Cell Line embryonic stem cell
48 chr2:54895800-54900600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
49 chr2:54895800-54902200 Weak transcription Ovary ovary
50 chr2:54896000-54898200 Strong transcription Fetal Heart heart

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