Variant report
Variant | rs3821022 |
---|---|
Chromosome Location | chr2:186585325-186585326 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:6)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
(count:6 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-ZSWIM2-6 | chr2:186584939-186585447 | ENSG00000226747 |
2 | lnc-ZSWIM2-6 | chr2:186584601-186585447 | ENSG00000226747 |
3 | lnc-ZSWIM2-6 | chr2:186584601-186585447 | NR_110215 |
4 | lnc-ZSWIM2-6 | chr2:186584601-186585447 | NR_110216 |
5 | lnc-ZSWIM2-6 | chr2:186584601-186585447 | NR_110214 |
6 | lnc-ZSWIM2-6 | chr2:186584601-186585447 | NR_110217 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1010838 | 0.87[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes] |
rs1010839 | 0.87[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes] |
rs1019429 | 0.87[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap] |
rs10445775 | 0.81[EUR][1000 genomes] |
rs10490390 | 0.87[CHB][hapmap];0.86[JPT][hapmap] |
rs10490391 | 0.87[CHB][hapmap];0.82[JPT][hapmap] |
rs10490392 | 0.87[CHB][hapmap];0.82[JPT][hapmap] |
rs10803992 | 0.81[EUR][1000 genomes] |
rs10803993 | 0.81[EUR][1000 genomes] |
rs10803994 | 0.84[ASN][1000 genomes] |
rs10931180 | 0.81[EUR][1000 genomes] |
rs10931190 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10931194 | 0.87[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes] |
rs1119051 | 0.82[ASN][1000 genomes] |
rs11695263 | 0.82[ASN][1000 genomes] |
rs11883784 | 0.87[CHB][hapmap];0.82[JPT][hapmap] |
rs11884004 | 0.84[ASN][1000 genomes] |
rs11884071 | 0.87[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap] |
rs11893212 | 0.89[ASN][1000 genomes] |
rs11894788 | 0.91[CHB][hapmap];0.85[JPT][hapmap] |
rs11903585 | 0.84[ASN][1000 genomes] |
rs12053506 | 0.84[ASN][1000 genomes] |
rs12615117 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12615448 | 0.88[EUR][1000 genomes] |
rs12618129 | 0.84[ASN][1000 genomes] |
rs12618572 | 0.86[EUR][1000 genomes] |
rs12620977 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1544710 | 0.87[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes] |
rs1544711 | 0.84[ASN][1000 genomes] |
rs1544712 | 0.84[ASN][1000 genomes] |
rs1544713 | 0.84[ASN][1000 genomes] |
rs16827054 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs16827058 | 0.89[ASN][1000 genomes] |
rs16827102 | 0.81[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs16827202 | 0.84[ASN][1000 genomes] |
rs17228146 | 0.84[ASN][1000 genomes] |
rs17228441 | 0.84[ASN][1000 genomes] |
rs17228483 | 0.87[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes] |
rs17229201 | 0.87[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap] |
rs17813736 | 0.84[ASN][1000 genomes] |
rs17814545 | 0.87[CHB][hapmap];0.82[JPT][hapmap] |
rs1986166 | 0.87[CHB][hapmap];0.89[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes] |
rs2111710 | 0.89[ASN][1000 genomes] |
rs2193611 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2193612 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2193821 | 0.85[ASN][1000 genomes] |
rs2370396 | 0.87[ASN][1000 genomes] |
rs2370400 | 0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2370474 | 0.87[ASN][1000 genomes] |
rs2370476 | 0.84[ASN][1000 genomes] |
rs2887761 | 0.87[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes] |
rs2887762 | 0.95[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes] |
rs36025519 | 0.88[ASN][1000 genomes] |
rs4017079 | 0.82[EUR][1000 genomes] |
rs4017080 | 0.87[EUR][1000 genomes] |
rs4257362 | 0.83[EUR][1000 genomes] |
rs4309546 | 0.81[EUR][1000 genomes] |
rs4334457 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4425049 | 0.81[EUR][1000 genomes] |
rs4547499 | 0.87[CHB][hapmap];0.82[JPT][hapmap] |
rs55730501 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs55856163 | 0.84[ASN][1000 genomes] |
rs58762332 | 0.88[ASN][1000 genomes] |
rs59321838 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs61751900 | 0.85[EUR][1000 genomes] |
rs6434136 | 0.82[EUR][1000 genomes] |
rs6434139 | 0.89[ASN][1000 genomes] |
rs6434140 | 0.89[ASN][1000 genomes] |
rs6434141 | 0.87[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes] |
rs66462659 | 0.89[ASN][1000 genomes] |
rs6705390 | 0.84[ASN][1000 genomes] |
rs6705753 | 0.87[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes] |
rs6732973 | 0.84[ASN][1000 genomes] |
rs6733690 | 0.82[ASN][1000 genomes] |
rs6743632 | 0.87[EUR][1000 genomes] |
rs6746722 | 0.82[ASN][1000 genomes] |
rs6753731 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6758929 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6759616 | 0.84[ASN][1000 genomes] |
rs67690898 | 0.84[ASN][1000 genomes] |
rs72898038 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs73035511 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73978688 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs73978689 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7424780 | 0.87[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes] |
rs7562137 | 0.83[ASN][1000 genomes] |
rs7564190 | 0.80[EUR][1000 genomes] |
rs7566166 | 0.84[ASN][1000 genomes] |
rs7566901 | 0.90[CHB][hapmap];0.85[JPT][hapmap] |
rs7570524 | 0.87[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes] |
rs7570827 | 0.84[ASN][1000 genomes] |
rs7574766 | 0.84[ASN][1000 genomes] |
rs7575226 | 0.87[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes] |
rs7584637 | 0.83[ASN][1000 genomes] |
rs7584776 | 0.87[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes] |
rs7587203 | 0.84[ASN][1000 genomes] |
rs7587685 | 0.84[ASN][1000 genomes] |
rs7592890 | 0.87[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes] |
rs7605519 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7607532 | 0.89[ASN][1000 genomes] |
rs888425 | 0.82[EUR][1000 genomes] |
rs9646802 | 0.87[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes] |
rs9679452 | 0.81[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv875541 | chr2:186345148-186598526 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
2 | nsv584018 | chr2:186352959-186598526 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv1007052 | chr2:186441382-186864390 | Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
4 | nsv584019 | chr2:186445393-186866874 | ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
5 | nsv1009118 | chr2:186450293-186864390 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
6 | esv2763034 | chr2:186473461-186587890 | Enhancers Weak transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
7 | nsv1008230 | chr2:186474069-186818718 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
8 | nsv536076 | chr2:186474069-186818718 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
9 | nsv584020 | chr2:186475590-186661567 | Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
10 | nsv584021 | chr2:186475590-186866841 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
11 | nsv1011628 | chr2:186523096-186594343 | Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
12 | nsv1003484 | chr2:186524793-186591557 | Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
13 | nsv1003603 | chr2:186524793-186594343 | Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
14 | esv2751838 | chr2:186531835-186591557 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
15 | nsv584022 | chr2:186531835-186591557 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
16 | nsv1010456 | chr2:186531835-186594343 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
17 | nsv875545 | chr2:186566024-187280164 | Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
SNP | Gene | Cis/trans | Tissue | Source |
---|---|---|---|---|
rs3821022 | AC007966.1 | cis | Stomach | GTEx |
rs3821022 | AC007966.1 | cis | Thyroid | GTEx |
rs3821022 | AC007966.1 | cis | Adipose Subcutaneous | GTEx |
rs3821022 | AC007966.1 | cis | Skin Sun Exposed Lower leg | GTEx |
rs3821022 | AC007966.1 | cis | Nerve Tibial | GTEx |
rs3821022 | AC007966.1 | cis | lung | GTEx |
rs3821022 | AC007966.1 | cis | Heart Left Ventricle | GTEx |
rs3821022 | AC007966.1 | cis | Esophagus Muscularis | GTEx |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:186565600-186603200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |