Variant report

Variant	rs3821112
Chromosome Location	chr2:55170597-55170598
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:55164941..55167851-chr2:55169428..55172697,4	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10153551	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10153785	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10200365	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10211316	0.84[AFR][1000 genomes]
rs4502460	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6545461	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6744548	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6749322	0.84[AFR][1000 genomes]
rs7586885	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7589959	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7590130	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7590241	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7590265	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7600676	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7606659	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9808435	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834069	chr2:55096597-55251680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv582029	chr2:55159043-55204498	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55166200-55172800	Weak transcription	Gastric	stomach
2	chr2:55168600-55172600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:55168800-55170600	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr2:55168800-55170800	Enhancers	Primary T cells fromperipheralblood	blood
5	chr2:55168800-55193400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr2:55169000-55170600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr2:55169000-55172400	Weak transcription	HepG2	liver
8	chr2:55169000-55172600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:55169000-55172600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr2:55169000-55172600	Weak transcription	Pancreas	Pancrea
11	chr2:55169000-55172800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr2:55169200-55170600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr2:55169200-55172200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr2:55169200-55172400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr2:55169200-55172400	Weak transcription	HMEC	breast
16	chr2:55169400-55170600	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr2:55169400-55170600	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr2:55169400-55170600	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr2:55169400-55170800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr2:55169400-55170800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr2:55169400-55171400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr2:55169600-55172600	Weak transcription	Brain Substantia Nigra	brain
23	chr2:55169800-55171600	Weak transcription	Brain Hippocampus Middle	brain
24	chr2:55169800-55172600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr2:55169800-55172600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr2:55169800-55172800	Weak transcription	Esophagus	oesophagus
27	chr2:55170000-55171800	Weak transcription	Brain Angular Gyrus	brain
28	chr2:55170000-55172400	Weak transcription	HSMM	muscle
29	chr2:55170000-55172800	Weak transcription	Lung	lung
30	chr2:55170200-55171800	Enhancers	Dnd41	blood
31	chr2:55170400-55171800	Weak transcription	Brain Anterior Caudate	brain
32	chr2:55170400-55172400	Weak transcription	Fetal Muscle Leg	muscle
33	chr2:55170400-55190400	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links