Variant report

Variant	rs3821664
Chromosome Location	chr3:151102305-151102306
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16863348	0.83[LWK][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes]
rs16863364	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16863368	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16863374	0.85[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35949713	0.99[AFR][1000 genomes]
rs59719955	0.84[AFR][1000 genomes]
rs62285878	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62285909	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6770918	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795716	0.90[YRI][hapmap];0.84[AFR][1000 genomes]
rs73008523	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151064600-151112400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:151065600-151109400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:151065600-151115200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:151069400-151129800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:151075600-151136400	Weak transcription	Fetal Brain Female	brain
6	chr3:151079800-151105400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:151080400-151105400	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:151083000-151110400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:151084400-151109200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr3:151086200-151102400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:151087600-151116000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:151090200-151142400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr3:151091600-151105400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:151095400-151105800	Weak transcription	Fetal Thymus	thymus
15	chr3:151095400-151111000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:151096000-151129000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:151096600-151112400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr3:151097800-151107800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr3:151097800-151108800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr3:151098800-151143400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr3:151099000-151103600	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr3:151099200-151102800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:151099400-151105400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:151099400-151107600	Enhancers	Primary B cells from peripheral blood	blood
25	chr3:151099400-151109000	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr3:151099600-151107600	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr3:151099800-151103000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr3:151099800-151103400	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr3:151099800-151107800	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr3:151100000-151102600	Enhancers	Fetal Intestine Large	intestine
31	chr3:151100200-151103000	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr3:151100600-151104000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr3:151100800-151102600	Active TSS	Duodenum Smooth Muscle	Duodenum
34	chr3:151100800-151102800	Active TSS	Brain Hippocampus Middle	brain
35	chr3:151101000-151102600	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr3:151101000-151102600	Enhancers	Small Intestine	intestine
37	chr3:151101000-151104800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr3:151101200-151102800	Active TSS	Rectal Mucosa Donor 29	rectum
39	chr3:151101200-151102800	Active TSS	Right Atrium	heart
40	chr3:151101400-151102400	Active TSS	Brain Substantia Nigra	brain
41	chr3:151101400-151102600	Active TSS	Brain Inferior Temporal Lobe	brain
42	chr3:151101600-151102600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr3:151101600-151102600	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr3:151101600-151102600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr3:151101600-151102600	Active TSS	Brain Angular Gyrus	brain
46	chr3:151101600-151102600	Enhancers	Fetal Kidney	kidney
47	chr3:151101600-151102600	Active TSS	Fetal Lung	lung
48	chr3:151101600-151102600	Active TSS	Stomach Smooth Muscle	stomach
49	chr3:151101600-151102600	Enhancers	Osteobl	bone
50	chr3:151101600-151102800	Active TSS	Brain Anterior Caudate	brain

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