Variant report

Variant	rs3821678
Chromosome Location	chr3:113441559-113441560
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:113441473..113444141-chr3:113463722..113467247,4	MCF-7	breast:
2	chr3:113440653..113444189-chr3:113444738..113447861,4	K562	blood:
3	chr3:113440561..113444692-chr3:113452909..113456959,4	K562	blood:
4	chr3:113440653..113444189-chr3:113445171..113447861,3	K562	blood:
5	chr3:113441202..113443932-chr3:113464494..113467019,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000242659	Chromatin interaction
ENSG00000114573	Chromatin interaction
ENSG00000121579	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2566972	1.00[JPT][hapmap]
rs2603791	1.00[JPT][hapmap]
rs2712356	0.86[ASN][1000 genomes]
rs8180078	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv1799124	chr3:113426201-113468350	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv482804	chr3:113432431-113581672	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv519099	chr3:113436847-113450495	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113431600-113443600	Weak transcription	Brain Substantia Nigra	brain
2	chr3:113432200-113447000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:113432800-113463000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:113432800-113463000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:113433000-113445400	Weak transcription	Fetal Intestine Small	intestine
6	chr3:113433000-113460000	Weak transcription	Aorta	Aorta
7	chr3:113433600-113450200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:113433800-113441600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:113433800-113442800	Strong transcription	Muscle Satellite Cultured Cells	--
10	chr3:113434000-113441800	Weak transcription	Fetal Kidney	kidney
11	chr3:113434000-113444600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:113435000-113444200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr3:113435000-113444800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:113435000-113463000	Weak transcription	Brain Germinal Matrix	brain
15	chr3:113435200-113450400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr3:113435200-113463000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr3:113435200-113463000	Weak transcription	Esophagus	oesophagus
18	chr3:113435400-113444000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr3:113435400-113456600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr3:113435400-113462600	Weak transcription	Brain Angular Gyrus	brain
21	chr3:113435600-113442800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr3:113435600-113445600	Weak transcription	Right Ventricle	heart
23	chr3:113435600-113449400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr3:113435600-113462200	Weak transcription	Thymus	Thymus
25	chr3:113436000-113462800	Weak transcription	Spleen	Spleen
26	chr3:113436400-113443000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr3:113436600-113442400	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr3:113436600-113442400	Strong transcription	HSMM	muscle
29	chr3:113436600-113443000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr3:113436600-113443600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr3:113436800-113442400	Strong transcription	Liver	Liver
32	chr3:113436800-113442400	Strong transcription	NH-A	brain
33	chr3:113436800-113442600	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr3:113436800-113442600	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr3:113436800-113443000	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr3:113436800-113443000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr3:113436800-113443000	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr3:113436800-113443200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr3:113436800-113443200	Strong transcription	HMEC	breast
40	chr3:113436800-113443400	Strong transcription	Dnd41	blood
41	chr3:113436800-113444000	Strong transcription	Duodenum Mucosa	Duodenum
42	chr3:113436800-113444600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr3:113436800-113444600	Strong transcription	GM12878-XiMat	blood
44	chr3:113436800-113444800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr3:113436800-113444800	Strong transcription	NHDF-Ad	bronchial
46	chr3:113436800-113445000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr3:113436800-113450000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr3:113437000-113442800	Strong transcription	Fetal Thymus	thymus
49	chr3:113437000-113444200	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr3:113437000-113444800	Weak transcription	Stomach Mucosa	stomach

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