Variant report

Variant	rs3821882
Chromosome Location	chr3:118661909-118661910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr3:118661222-118661928	K562	blood:	n/a	n/a
2	YY1	chr3:118661713-118661967	K562	blood:	n/a	n/a
3	ZNF384	chr3:118661557-118661966	K562	blood:	n/a	n/a
4	TEAD4	chr3:118661470-118661909	K562	blood:	n/a	n/a
5	MYC	chr3:118661418-118661972	K562	blood:	n/a	n/a
6	MAX	chr3:118661547-118661940	K562	blood:	n/a	n/a
7	MAZ	chr3:118661188-118661991	K562	blood:	n/a	n/a
8	MAX	chr3:118661531-118661983	K562	blood:	n/a	n/a
9	RCOR1	chr3:118661169-118662144	K562	blood:	n/a	n/a
10	UBTF	chr3:118661216-118661984	K562	blood:	n/a	n/a
11	IRF1	chr3:118661483-118662930	K562	blood:	n/a	chr3:118662308-118662320
12	MYC	chr3:118661468-118661955	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:118648830..118650762-chr3:118659707..118662135,2	K562	blood:

Variant related genes	Relation type
IGSF11-AS1	TF binding region
ENSG00000144847	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1158699	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12485923	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12492855	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12495725	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12496820	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1435655	1.00[CEU][hapmap]
rs16829179	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2160054	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28573387	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28592657	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4611809	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56728928	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58284747	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6772441	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6773865	1.00[CEU][hapmap]
rs6779428	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6807110	1.00[CEU][hapmap]
rs6807838	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72968605	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72968610	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7633584	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9817943	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9821022	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9821458	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9828870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9833229	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9836642	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9855713	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9860140	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9867214	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9873807	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9874208	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9874337	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv1010475	chr3:118657382-118789714	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118620200-118663200	Weak transcription	Pancreas	Pancrea
2	chr3:118658000-118668400	Weak transcription	A549	lung
3	chr3:118660200-118662800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr3:118660400-118662200	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr3:118660600-118662000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:118660600-118662000	Enhancers	Brain Angular Gyrus	brain
7	chr3:118660600-118662200	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr3:118660600-118662200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr3:118660600-118662800	Enhancers	Brain Hippocampus Middle	brain
10	chr3:118660800-118662000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr3:118660800-118662000	Enhancers	Fetal Lung	lung
12	chr3:118660800-118662600	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr3:118660800-118664600	Enhancers	Brain Anterior Caudate	brain
14	chr3:118661000-118662000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr3:118661000-118662000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:118661000-118662000	Enhancers	Ovary	ovary
17	chr3:118661000-118662000	Flanking Active TSS	K562	blood
18	chr3:118661000-118662800	Enhancers	Brain Cingulate Gyrus	brain
19	chr3:118661000-118665600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:118661200-118662000	Flanking Active TSS	Primary T cells from cord blood	blood
21	chr3:118661200-118662000	Enhancers	Psoas Muscle	Psoas
22	chr3:118661200-118662000	Enhancers	Right Atrium	heart
23	chr3:118661200-118662600	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr3:118661200-118662800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr3:118661200-118663800	Enhancers	Brain Substantia Nigra	brain
26	chr3:118661200-118665600	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr3:118661400-118662000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr3:118661400-118662000	Enhancers	Brain Germinal Matrix	brain
29	chr3:118661400-118662800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:118661400-118662800	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr3:118661600-118662000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:118661600-118662000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr3:118661600-118662000	Enhancers	Primary T cells fromperipheralblood	blood
34	chr3:118661600-118662000	Flanking Active TSS	Fetal Heart	heart
35	chr3:118661600-118662000	Enhancers	Left Ventricle	heart
36	chr3:118661600-118662800	Enhancers	Pancreatic Islets	Pancreatic Islet
37	chr3:118661600-118666600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr3:118661800-118662200	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr3:118661800-118663400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr3:118661800-118664200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr3:118661800-118665600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr3:118661800-118667000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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